MmuEX6107628 @ mm10
Exon Skipping
Gene
ENSMUSG00000027577 | Chrna4
Description
cholinergic receptor, nicotinic, alpha polypeptide 4 [Source:MGI Symbol;Acc:MGI:87888]
Coordinates
chr2:181034109-181039305:-
Coord C1 exon
chr2:181038992-181039305
Coord A exon
chr2:181037419-181037570
Coord C2 exon
chr2:181034109-181034153
Length
152 bp
Sequences
Splice sites
3' ss Seq
ACTTTCTGCCTCCCCCACAGCTA
3' ss Score
10.14
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
CCTCCTCCCCTCTCGCCGGCGGCTGGAGGCTGCAGGTCCGGGCGGGGCCGCGCCGCGGAGCCCACAACCTCGAGCTCCCGCCCCGCCGCCGCACCCCGCGGGACGAGCTGCGGAGCCCGGTTTGGGGACGAGCGGCCGCGACACGGGGCATGAAGTTGGGTGCGCGCGGGTCTCGGAGCGGAGGCGCGGTACTGCCGGGAGCCGCCCTCGTCTAGAGCCCGTTCTGTGAGCCATGGAGATCGGGGGCTCCGGGGCGCCGCCGCCGCTGCTGCTCCTGCCGCTCCTGCTGCTCTTAGGGACCGGCCTCTTGCCTG
Seq A exon
CTAGCAGCCACATAGAGACCCGGGCCCATGCGGAGGAGCGGCTCCTGAAGAGACTCTTCTCTGGCTACAACAAGTGGTCTCGGCCAGTAGCCAATATCTCAGATGTGGTCCTTGTCCGCTTTGGCTTGTCGATTGCTCAGCTCATTGATGTG
Seq C2 exon
GATGAGAAAAACCAGATGATGACGACCAACGTGTGGGTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027577_MULTIEX1-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(24.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTCGAGCTCCCGCC
R:
CGTCATCATCTGGTTTTTCTCATC
Band lengths:
274-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types