BtaEX0009010 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017198 | CHRNA4
Description
cholinergic receptor, nicotinic, alpha 4 (neuronal) [Source:HGNC Symbol;Acc:HGNC:1958]
Coordinates
chr13:54714619-54719993:+
Coord C1 exon
chr13:54714619-54714694
Coord A exon
chr13:54716126-54716277
Coord C2 exon
chr13:54719949-54719993
Length
152 bp
Sequences
Splice sites
3' ss Seq
GCACCCGCGTGTCCCCCCAGTGA
3' ss Score
7.48
5' ss Seq
GTGGTAGGT
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATGGAGCTCGGGGGCCCGGGGACGTCGCCGCTGCCGCCGCTGCTGCTGCTGCTTCTAGGGGCCGGCCTCCTGCCTG
Seq A exon
TGAGCAGCCATGCAGAGACCCGGGCTCATGCGGAGGAGCGGCTGCTGAAGAAGCTCTTCTCTGGCTATAATAAGTGGTCCCGGCCTGTGGCTAACATCTCGGATGCGGTTCTTGTCCACTTCGGCCTATCCATCGCGCAGCTCATTGATGTG
Seq C2 exon
GATGAGAAGAACCAGATGATGACGACGAATGTGTGGGTGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017198-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0293118=Neur_chan_LBD=PU(18.8=76.5)
C2:
PF0293118=Neur_chan_LBD=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGCTGCTTCTAGG
R:
CTGCTTCACCCACACATTCGT
Band lengths:
82-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development