RnoEX0061339 @ rn6
Exon Skipping
Gene
ENSRNOG00000021016 | Ntn5
Description
netrin 5 [Source:RGD Symbol;Acc:1565197]
Coordinates
chr1:101670755-101674709:+
Coord C1 exon
chr1:101670755-101671399
Coord A exon
chr1:101674201-101674389
Coord C2 exon
chr1:101674560-101674709
Length
189 bp
Sequences
Splice sites
3' ss Seq
TGACCTCGTCTTGTTCCCAGCAT
3' ss Score
6.17
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
CCCCTGCTCTCAGACCTGTGCTCTTCCTGCAGACAGCCCTGACCCTGTCTGCAATGGCACTCTGACCCTGGACCTGGACGGCTCCTTCCTCTTGACGTCTGTCACCCTGCGTTTCTGCACCGCAGGACCTCCAGCCCTGGTTCTTTCTGCTGCCTGGGCCATTGGAGGCCCCTGGAGGCCACTATGGCGCAGGCCTGCCTGGCCTGGGGTTTTGGGGGGTCCCAAGAAGGTAACCTTTCACTCCCCACCAGGCCCCAAGACCAGGATAGTGGCCAGCTACCTCCGTGTGGAGCTCGGGGGGAAAGCAGGGCTGGTGACCACTGGAGTAAGAGGCCGCTGCCAGTGCCATGGCCACGCTGCCCGCTGTGCCGCTCGGGCCCAGCCCCCACGCTGCCGCTGCCGCCACCACACCACTGGCCCAGGGTGTGAGAGCTGTCGCCCATCCCATCGAGACTGGCCCTGGAGACCTGCCACACCCCAGCACCCTCACCCGTGCTTGC
Seq A exon
CATGCTCCTGCAATCAGCATGCCAGGCGCTGCCGGTTCAACTCCGAGCTATTCAGGTTGTCAGGTGGCCGCAGCGGGGGTGTGTGCGAGCGGTGCCGCCACCACACAGCCGGGCGGCACTGTCACTACTGCCAGCCGGGGTTCTGGAGGGACCCAAGCCAGCCCATCACTAGTCCCAAGGCATGCAGGG
Seq C2 exon
CCTGCCAGTGTCACCCAATTGGAGCAACAGGAGGGATGTGCAACCAGACCAGTGGCCAGTGCTCCTGCAAGTTAGGGGTCACGGGCCTGACATGCAATCACTGTGGTCCTGGGTACCAGCAGAGCCGCTCACCCAGGATGCCCTGTCAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021016_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=0.000 C2=0.039
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=WD(100=24.5)
A:
PF0005319=Laminin_EGF=WD(100=95.3)
C2:
PF0005319=Laminin_EGF=WD(100=96.1)
Main Inclusion Isoform:
ENSRNOT00000028524fB9921
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGTGACCACTGGAGTAAG
R:
CACTGGTCTGGTTGCACATCC
Band lengths:
245-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]