RnoEX0088079 @ rn6
Exon Skipping
Gene
ENSRNOG00000000483 | Syngap1
Description
synaptic Ras GTPase activating protein 1 [Source:RGD Symbol;Acc:621090]
Coordinates
chr20:5547037-5549084:+
Coord C1 exon
chr20:5547037-5547158
Coord A exon
chr20:5548646-5548783
Coord C2 exon
chr20:5548986-5549084
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCAGGGCCCGGCTGATGCAGAGC
3' ss Score
1.53
5' ss Seq
GAGGTAGTG
5' ss Score
4.58
Exon sequences
Seq C1 exon
CAAGGCTTCCTGAGCCGGAGGCTAAAAAGCTCCATCAAACGTACAAAGTCACAACCCAAACTTGACCGGACCAGCAGCTTTCGACAGATCCTGCCTCGCTTCCGAAGTGCTGACCATGACCG
Seq A exon
AGCTTCAAGGAGTCTCACTCCCATGAGTCCCTGCTGAGTCCCAGCAGTGCTGCTGAGGCCCTGGAGCTCAACCTGGATGAAGACTCCATTATCAAGCCAGTACACAGCTCCATCCTGGGCCAGGAGTTCTGCTTTGAG
Seq C2 exon
GTAACAACATCGTCTGGGACAAAATGTTTTGCCTGTCGGTCTGCAGCCGAAAGGGACAAATGGATTGAGAATCTACAGAGGGCTGTGAAACCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000483-'24-20,'24-19,25-20
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.231 C2=0.121
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(18.1=100)
A:
PF0016924=PH=FE(23.1=100)
C2:
PF0016924=PH=PD(13.1=87.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGGCTAAAAAGCTCCAT
R:
TTGTTGGGTTTCACAGCCCTC
Band lengths:
206-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]