BtaEX6096956 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020975 | SYNGAP1
Description
synaptic Ras GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:11497]
Coordinates
chr23:7550188-7552508:+
Coord C1 exon
chr23:7550188-7550309
Coord A exon
chr23:7552036-7552189
Coord C2 exon
chr23:7552410-7552508
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGGACCCCCACCCTGCCAGGGC
3' ss Score
4.8
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
CAAGGCTTCCTGAGCCGGAGGCTAAAAAGCTCCATCAAACGCACGAAGTCACAACCCAAACTTGACCGGACCAGCAGCTTCCGCCAGATCCTGCCTCGCTTCCGAAGTGCTGACCATGACCG
Seq A exon
GGCCCGGCTGATGCAGAGCTTTAAGGAGTCGCACTCTCACGAGTCCCTGCTGAGTCCTAGTAGCGCGGCCGAGGCCTTGGAGCTCAACTTGGATGAAGACTCCATTATCAAGCCAGTGCACAGCTCCATTCTGGGCCAGGAGTTCTGTTTTGAG
Seq C2 exon
GTAACAACATCATCAGGAACAAAATGCTTTGCCTGTCGTTCTGCCGCTGAAAGGGACAAATGGATCGAGAACCTGCAGCGGGCAGTGAAGCCCAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020975-'20-8,'20-7,21-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.341 A=0.231 C2=0.121
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(18.0=100)
A:
PF0016924=PH=FE(23.0=100)
C2:
PF0016924=PH=PD(13.1=87.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAGGCTAAAAAGCTCCAT
R:
GCTGCAGGTTCTCGATCCATT
Band lengths:
187-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]