RnoEX6005448 @ rn6
Exon Skipping
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212333741-212335813:-
Coord C1 exon
chr1:212335685-212335813
Coord A exon
chr1:212334553-212334716
Coord C2 exon
chr1:212333741-212333952
Length
164 bp
Sequences
Splice sites
3' ss Seq
CGCTCTGGGCTCTATTTCAGCAC
3' ss Score
7.39
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
AAATTTACACAGAGTATGAAACTGGACAGTGAACTAGGCCGTCTGACACTGGATCAGGGTAGTGTGCAGGGGCCACCCCCAGAGAGTGAGCGGATTGATGATCGTCCCCGGAAGGAGCCTACCAGGAAG
Seq A exon
CACCTGCCTGAGCATGTGGACACTCCTCAGCTGTCCTCCGGCTTCGAGGCCACCATCAACAACTTTGACAAAAACTTCTCTGCCCATCTTCTTGATTTGCTGGCCCGACTAAGTGTCTACAGCACCAGTGACTGTGAACACGGCATGGCCAGTGTCATCTCCAG
Seq C2 exon
GCTAGATTTCAATGGTTTCTATGCGGAACGCCTGGAACGTCTGTCTGCAGAAAGGAGTCAGAAAGCTGCCCCCCAAGTGCCTGTCCCAAGGGGACCCCCAGCACCAGCATCCAGGGTGGCCATTCCTGCTCAATGAGCTTACTTGTTAAATATCATATTTCTGGAACCTGGGTGTTATACGTTATTACTGCTTAAATATGGTATGAGTTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137-'21-28,'21-25,23-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.640 A=0.227 C2=0.656
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTGAACTAGGCCGTCT
R:
TCATTGAGCAGGAATGGCCAC
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]