MmuEX0049890 @ mm10
Exon Skipping
Gene
ENSMUSG00000025474 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:MGI Symbol;Acc:MGI:1921487]
Coordinates
chr7:139995955-139998100:-
Coord C1 exon
chr7:139997972-139998100
Coord A exon
chr7:139996782-139996832
Coord C2 exon
chr7:139995955-139996166
Length
51 bp
Sequences
Splice sites
3' ss Seq
GATTTGCTGGCCCGACTAAGTGT
3' ss Score
-1.42
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAATTTACACAGAGTATGAAACTGGACAGTGAGCTAGGCCGTCTGACACTGGATCAGGGTAGTGTGCAGGGGCCACCCACAGAGACTGAACGGATTGAGGATCGCCCCCGGAAGGAGCTTACCAGGAAG
Seq A exon
TGTCTACAGCACCAGTGACTGCGAACATGGCATGGCCAGTGTCATCTCCAG
Seq C2 exon
ACTAGATTTCAATGGTTTCTATGCTGAACGCCTGGAACGTCTGTCTGCAGAAAGGAGTCAGAAGGCTGCCCCCCAAGTGCCTGTCCCACGGGGACCCTCAGCACCAGCACCCAGGGTGGCCATTCCTGCGCAATGAGCTCACTTGTTAAATATCATTATTTCTGGAACATGGCTGTTGTGCATTATTACTGCTTAAATATGGTTTGAGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025474-'39-53,'39-52,40-53
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.073 C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGATCAGGGTAGTGTGCA
R:
GCCTTCTGACTCCTTTCTGCA
Band lengths:
148-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types