GgaEX1061241 @ galGal4
Exon Skipping
Gene
ENSGALG00000003526 | TUBGCP2
Description
gamma-tubulin complex component 2 [Source:RefSeq peptide;Acc:NP_001006496]
Coordinates
chr6:8879503-8883377:-
Coord C1 exon
chr6:8883249-8883377
Coord A exon
chr6:8882447-8882610
Coord C2 exon
chr6:8879503-8879755
Length
164 bp
Sequences
Splice sites
3' ss Seq
CAAATCCTTTGTCTTGGTAGCTT
3' ss Score
5.59
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGGTTCACCCAGAGCATGAAGCTGGATAGCGAGATGGACCGGCTCAGCCTAGAGCATGGCACGATGCTGGGCCCACCAACAGAGGAAGAGCGTGCTGAAGAGACCGCAAAGAAGAAGCTGACTAGCAAG
Seq A exon
CTTTTAGCAGAGCATGCTGACAACCTCCATTTGACATCTGGCTTTGAAGCAACGATCAACAAGTTTGATACTAATTTCTCAACGCATCTGCTGGATCTGTTGGACCGGCTAAGCATTTACAGCACCAATGACTGCGAGCACAGCATGCTTAACATCATCTACAG
Seq C2 exon
GTTGGACTTCAATGGGTTCTACACGGAGCGCCTGGAGCACATGTCTGCAGAGCGGAGCCAAAGGGCAGCCCCACCACCCCCCTGTGCCGCCGCGCCGACCCCATGAAGGAGATGGGGGAGCATTGGAACCTCTGGAATGAGCGTGATGGGATCTGCTCTTCTGAGAGGCTTTTGTGAAGTCTTTTTTTTTTTTTCTTTTTTTTTTTTAACTCCATTGTAAAATGATGTCTTAATGTGTTGTAAAATAAAAGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526-'24-28,'24-26,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.000 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTAGAGCATGGCACGATGCTG
R:
GAAGAGCAGATCCCATCACGC
Band lengths:
242-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]