HsaEX6091295 @ hg19
Exon Skipping
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin, gamma complex associated protein 2 [Source:HGNC Symbol;Acc:18599]
Coordinates
chr10:135093135-135095846:-
Coord C1 exon
chr10:135095727-135095846
Coord A exon
chr10:135094777-135094940
Coord C2 exon
chr10:135093135-135093405
Length
164 bp
Sequences
Splice sites
3' ss Seq
CACCCCGGCTTTCTTTCCAGCAC
3' ss Score
9.33
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAATTTACACAGAGCATGAAATTAGATGGCGAGCTGGGCGGGCAGACGCTGGAGCACAGCACCGTCCTGGGGCTGCCCGCAGGGGCCGAGGAGCGGGCCCGGAAGGAGCTCGCCAGGAAG
Seq A exon
CACCTGGCTGAGCACGCAGACACTGTGCAGCTGGTGTCCGGCTTCGAGGCCACCATCAACAAGTTTGACAAGAACTTCTCAGCCCACCTGCTGGACCTCCTGGCCCGGCTGAGCATCTATAGCACCAGTGACTGTGAGCACGGCATGGCCAGCGTCATCTCCAG
Seq C2 exon
GCTTGACTTCAATGGTTTCTACACGGAGCGCCTGGAGCGCCTGTCTGCAGAGAGGAGCCAGAAGGCCACCCCCCAAGTGCCTGTCCTGCGGGGGCCCCCGGCTCCTGCACCCAGGGTCGCAGTCACCGCACAGTGAGCCCTGGCTGTGACAGGAAGGAAGGGTGTGGGGTCAGCAGGGACTGGTGCAAATGGGTCCAGAATTTTCAAATCGAATGCTCTGTGTTCTGTCTTTGCAGTTTAAATATAAAGCAGGAATGATTGACTCAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-'25-33,'25-32,26-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTAGATGGCGAGCTGGGC
R:
CTTCCTGTCACAGCCAGGG
Band lengths:
258-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)