DreEX6067928 @ danRer10
Exon Skipping
Gene
ENSDARG00000013079 | tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:ZFIN;Acc:ZDB-GENE-031118-150]
Coordinates
chr12:9172596-9180415:+
Coord C1 exon
chr12:9172596-9172715
Coord A exon
chr12:9175928-9176091
Coord C2 exon
chr12:9180143-9180415
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCTGTTTGTCTTCATCTTAGTTT
3' ss Score
7.52
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
CGGTTCACACAAAGCATGAGGATAGACAGCGAGATGAAGCGTCTGACTCTTGAGCACGGCACTATAGAAGGCACTTCAGTCCTGGCTGACGAGGCCGAGAAAAAAAGACTGGCCTCTAAA
Seq A exon
TTTCTAGCTGAGCATGTGGATGCTCTTCAGTCTGACTCCGGGTTCGAGGGGACCATCAGCAAGTTTGACAGTAACTTCAGCACTTTATTGCTGGATCTTTTGGACAAGCTCAGCATTTACAGCACCAATGACTGTGAACACAGCATGATCAACATCATCTACAG
Seq C2 exon
GCTAGACTTCAATGGCTTTTACACTGAGAGACTGGAGCGCATGGCCATCGAAAGAAGCCAGAAGACGGTAGCGTAGCATTATCTATCAAAATATCCAGCTGTTTTATAGAGTTCTGTGTTGATTTGTTGCCTAATTTCCCCACTTAACTATATGTAATGCTATTATGTGGTGCTGTAACATGAAGCACTTTTCTGTTGGACATGCTTTTAATGGTCATGTATAAATTCCACAAATTCAAACTCAAATAAAAACTCAGTATAATAAAGTAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013079-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACGGCACTATAGAAGGC
R:
TGCTTCATGTTACAGCACCACA
Band lengths:
256-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]