BtaEX6100698 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006395 | TUBGCP2
Description
Bos taurus tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098149]
Coordinates
chr26:25956485-25958640:+
Coord C1 exon
chr26:25956485-25956613
Coord A exon
chr26:25957254-25957417
Coord C2 exon
chr26:25958401-25958640
Length
164 bp
Sequences
Splice sites
3' ss Seq
GGGGGCACCGTGTCTTGCAGTGC
3' ss Score
4.08
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
AGATTTACGCAGAGCATGAAACTGGACAGCGAGCTGGGCCGCCTGACGCTGGAGCACGGCACGATGCAGGGGCCTCCCACAGAGGCCGAGCGGGCCGAGGAGCGCACCCGCAAGGAGCTCGCCCGCAAG
Seq A exon
TGCCTGGCTGAGCATGTGGACGCGCCACAGCTGGCCTCCAGCTTCGAGGCCACCATCAATAAATTTGATAAGAATTTCTCAGCTCACCTGCTCGACCTCCTGGCCCGGCTGAGCGTCTACAGCACCAGCGACTGCGAGCACGGCATGGCCAGTGTCATCTCCAG
Seq C2 exon
GCTGGACTTCAACGGCTTCTACACGGAGCGACTGGAGCGCCTATCTGCAGAAAGGAGCCAGAAGGTGGCACCCCCCGTGCCCGGCCCGCGGGGGCCTCCTGCCCCCGCGCCCAGGGTGGCCGTGCCCGCGCAGTGACGGTGCCCGGCTGTCCCGGCTGAGCCTCGGTGGGAGAGGCTCCACAGCGTCTCTGGAGCGCGTGTGCCGTGTGTTCTGCCCAAACATAAAGTTGACGCGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006395-'25-29,'25-28,26-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGCTCGCCCGCAAG
R:
GCAGGCGCGTCAACTTTATGT
Band lengths:
258-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]