GgaEX1061241 @ galGal3
Exon Skipping
Gene
ENSGALG00000003526 | Q5ZKY5_CHICK
Description
NA
Coordinates
chr6:10462680-10466405:-
Coord C1 exon
chr6:10466277-10466405
Coord A exon
chr6:10465475-10465638
Coord C2 exon
chr6:10462680-10462783
Length
164 bp
Sequences
Splice sites
3' ss Seq
CAAATCCTTTGTCTTGGTAGCTT
3' ss Score
5.59
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
AGGTTCACCCAGAGCATGAAGCTGGATAGCGAGATGGACCGGCTCAGCCTAGAGCATGGCACGATGCTGGGCCCACCAACAGAGGAAGAGCGTGCTGAAGAGACCGCAAAGAAGAAGCTGACTAGCAAG
Seq A exon
CTTTTAGCAGAGCATGCTGACAACCTCCATTTGACATCTGGCTTTGAAGCAACGATCAACAAGTTTGATACTAATTTCTCAACGCATCTGCTGGATCTGTTGGACCGGCTAAGCATTTACAGCACCAATGACTGCGAGCACAGCATGCTTAACATCATCTACAG
Seq C2 exon
GTTGGACTTCAATGGGTTCTACACGGAGCGCCTGGAGCACATGTCTGCAGAGCGGAGCCAAAGGGCAGCCCCACCACCCCCCTGTGCCGCCGCGCCGACCCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=0.000 C2=0.582
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTCACCCAGAGCATGAAGC
R:
TGGTGGGGCTGCCCTTTG
Band lengths:
204-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]