HsaEX6091295 @ hg38
Exon Skipping
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
Coordinates
chr10:133278630-133282342:-
Coord C1 exon
chr10:133282223-133282342
Coord A exon
chr10:133281273-133281436
Coord C2 exon
chr10:133278630-133279901
Length
164 bp
Sequences
Splice sites
3' ss Seq
CACCCCGGCTTTCTTTCCAGCAC
3' ss Score
9.33
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AAATTTACACAGAGCATGAAATTAGATGGCGAGCTGGGCGGGCAGACGCTGGAGCACAGCACCGTCCTGGGGCTGCCCGCAGGGGCCGAGGAGCGGGCCCGGAAGGAGCTCGCCAGGAAG
Seq A exon
CACCTGGCTGAGCACGCAGACACTGTGCAGCTGGTGTCCGGCTTCGAGGCCACCATCAACAAGTTTGACAAGAACTTCTCAGCCCACCTGCTGGACCTCCTGGCCCGGCTGAGCATCTATAGCACCAGTGACTGTGAGCACGGCATGGCCAGCGTCATCTCCAG
Seq C2 exon
GCTTGACTTCAATGGTTTCTACACGGAGCGCCTGGAGCGCCTGTCTGCAGAGAGGAGCCAGAAGGCCACCCCCCAAGTGCCTGTCCTGCGGGGGCCCCCGGCTCCTGCACCCAGGGTCGCAGTCACCGCACAGTGAGCCCTGGCTGTGACAGGAAGGAAGGGTGTGGGGTCAGCAGGGACTGGTGCAAATGGGTCCAGAATTTTCAAATCGAATGCTCTGTGTTCTGTCTTTGCAGTTTAAATATAAAGCAGGAATGATTGACTCAGCTCACTTTGTTTCTCAAGGCGCTGGGTTTCGTTTTATAGAAGCTGCCCAGGCAGGGTGGATGTCTCCCTGGATTTGCTAATCTGTTTGCTTTTTGAAATTACACTATCACCTTTTTGGGTGTTTTTGGCCTCAAAGTGGAAATACATGGTGTTTAAGCCAGGAGCAAGCAAAGATGCATGTGGGGTAAGATCCAGGCCTGGTGTCCACATCTTTCCGGGTGAGCTGGGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-'58-63,'58-61,63-63
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAATTAGATGGCGAGCTGGGC
R:
CTTCCTGTCACAGCCAGGG
Band lengths:
258-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains