MmuEX0049890 @ mm9
Exon Skipping
Gene
ENSMUSG00000025474 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:MGI Symbol;Acc:MGI:1921487]
Coordinates
chr7:147181854-147183999:-
Coord C1 exon
chr7:147183871-147183999
Coord A exon
chr7:147182681-147182844
Coord C2 exon
chr7:147181854-147182065
Length
164 bp
Sequences
Splice sites
3' ss Seq
TCCCTGGGCTCTGTTTTCAGCAT
3' ss Score
8.95
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AAATTTACACAGAGTATGAAACTGGACAGTGAGCTAGGCCGTCTGACACTGGATCAGGGTAGTGTGCAGGGGCCACCCACAGAGACTGAACGGATTGAGGATCGCCCCCGGAAGGAGCTTACCAGGAAG
Seq A exon
CATCTGTCTGAGCATGTGGATGCTCCTCAGCTGGCCTCTGGTTTCGAGGCCACCATCAACAACTTTGACAAAAACTTCTCTGCCCATCTTCTTGATTTGCTGGCCCGACTAAGTGTCTACAGCACCAGTGACTGCGAACATGGCATGGCCAGTGTCATCTCCAG
Seq C2 exon
ACTAGATTTCAATGGTTTCTATGCTGAACGCCTGGAACGTCTGTCTGCAGAAAGGAGTCAGAAGGCTGCCCCCCAAGTGCCTGTCCCACGGGGACCCTCAGCACCAGCACCCAGGGTGGCCATTCCTGCGCAATGAGCTCACTTGTTAAATATCATTATTTCTGGAACATGGCTGTTGTGCATTATTACTGCTTAAATATGGTTTGAGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025474-'24-26,'24-24,25-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.073 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGGTAGTGTGCAGGGG
R:
GCACAACAGCCATGTTCCAGA
Band lengths:
258-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: