RnoEX6018565 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112250990-112256176:+
Coord C1 exon
chr3:112250990-112251059
Coord A exon
chr3:112252325-112252443
Coord C2 exon
chr3:112256043-112256176
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGGTCTGCGTTTACTTGCAGGGG
3' ss Score
8.38
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GAAATTTGTGAGAATCCCCGATTTATCATTGGTGGAGCCAACAGGACTGACATCTGCCAAGGAGATCTAG
Seq A exon
GGGACTGCTGGTTTCTTGCAGCCATTGCCTGTCTGACCCTGAATGAGCGACTGCTTTTCCGAGTTATACCTCATGATCAAAGTTTCACTGAAAACTACGCAGGGATCTTCCACTTCCAG
Seq C2 exon
TTCTGGCGCTATGGAGACTGGGTAGATGTGGTTATTGACGACTGTCTGCCGACATACAACAACCAGCTGGTCTTCACCAAATCCAACCACCGCAATGAGTTCTGGAGTGCTCTACTGGAGAAAGCATATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'2-12,'2-3,6-12=AN
Average complexity
A_C3
Mappability confidence:
94%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(11.3=100)
A:
PF0064816=Peptidase_C2=FE(19.1=100)
C2:
PF0064816=Peptidase_C2=FE(21.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTAACTGTATTGAGACTTCTTCCA
R:
AACTCTCCATCCTCGGTGACC
Band lengths:
172-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]