RnoEX0016708 @ rn6
Exon Skipping
Gene
ENSRNOG00000008609 | Capn3
Description
calpain 3 [Source:RGD Symbol;Acc:2269]
Coordinates
chr3:112229764-112252443:+
Coord C1 exon
chr3:112229764-112229864
Coord A exon
chr3:112250990-112251059
Coord C2 exon
chr3:112252325-112252443
Length
70 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTATTTGTTTCACAGGAA
3' ss Score
10.27
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
CTCTTCTTAACTGTATTGAGACTTCTTCCATTTCTCAGGCTAAAATCATGAGATGCTGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG
Seq A exon
GAAATTTGTGAGAATCCCCGATTTATCATTGGTGGAGCCAACAGGACTGACATCTGCCAAGGAGATCTAG
Seq C2 exon
GGGACTGCTGGTTTCTTGCAGCCATTGCCTGTCTGACCCTGAATGAGCGACTGCTTTTCCGAGTTATACCTCATGATCAAAGTTTCACTGAAAACTACGCAGGGATCTTCCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008609-'2-3,'2-2,5-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0064816=Peptidase_C2=FE(11.3=100)
C2:
PF0064816=Peptidase_C2=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGCTAAAATCATGAGATGCTGT
R:
AGTGGAAGATCCCTGCGTAGT
Band lengths:
181-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]