HsaEX6074181 @ hg19
Exon Skipping
Gene
ENSG00000092529 | CAPN3
Description
calpain 3, (p94) [Source:HGNC Symbol;Acc:1480]
Coordinates
chr15:42646538-42678483:+
Coord C1 exon
chr15:42646538-42646651
Coord A exon
chr15:42676681-42676750
Coord C2 exon
chr15:42678365-42678483
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTTTTTGTTTCACAGGAA
3' ss Score
11.53
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
GGTTCCTAAAAAAGCTCTAAAATGAATGCATAGTGTGTCTTTCCTTCAAGATGTAAATGTCAAGGAATGAGTTGGCAAATCAGTTTAAAAACACAAACTACCCAACAGAAAAAT
Seq A exon
GAAATTTGCGAGAATCCCCGATTTATCATTGATGGAGCCAACAGAACTGACATCTGTCAAGGAGAGCTAG
Seq C2 exon
GGGACTGCTGGTTTCTCGCAGCCATTGCCTGCCTGACCCTGAACCAGCACCTTCTTTTCCGAGTCATACCCCATGATCAAAGTTTCATCGAAAACTACGCAGGGATCTTCCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092529-'4-15,'4-13,11-15=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(6.4=75.0)
A:
PF0064816=Peptidase_C2=FE(11.3=100)
C2:
PF0064816=Peptidase_C2=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAAGGAATGAGTTGGCAA
R:
AGTGGAAGATCCCTGCGTAGT
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)