GgaEX6038025 @ galGal3
Exon Skipping
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27818851-27825587:+
Coord C1 exon
chr5:27818851-27819364
Coord A exon
chr5:27824661-27824730
Coord C2 exon
chr5:27825469-27825587
Length
70 bp
Sequences
Splice sites
3' ss Seq
TATCTGTTTATATTTTACAGGAA
3' ss Score
10.03
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
CATCAAGGAATAAATTCCACTTTCTTACGCAGAAATACTGCCCTTTGAGAAGATGCACAGGGAGCTGAACCAGATGGAATTATATCGCTTACAAGTGTAACTAAGAGATTTCAACAAAAAGGGGCAACAGCAACTTCCCCTTTTCTCCAATTTCCTTCCAGCGTGCGAGATCTTGCTTTCTTTCAACACTTGCTGTGAGGCCACTTCTCATGCCGTCCGCCATAAATGCAGCGGTGGCTCAGCAGACAGCTGCCGGGTCAGTTCCCAGCACTACCAGCACTACCACTGAAGGTACAGGGGGAGGCACAGGAGGGATTTATTCTGCCATTATAAGTCGCAACCAGCCCATTATCAAAGTAAAGGAAAAGACCTATGAAGAGCTTCACAAGAAGTGCCTGGAGGAGAACATTCTCTATGAGGATCCTGATTTTCCACCTAATGAGACTTCCCTCTTCTACAGCCAGAAAGTCCCCATCAAGTTTGAATGGAAAAGACCACGT
Seq A exon
GAAATCTGTGAGAATCCACGATTTATTATCGGCGGAGCCAACAGAACAGATATCTGCCAAGGAGAATTAG
Seq C2 exon
GCGATTGCTGGTTCCTGGCTGCCATTGCTTGCCTGACACTGAATAAAAAACTGCTCTGCAGAGTCATACCTCATGACCAGTCCTTCATACAGAACTATGCTGGCATCTTTCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(8.5=29.9)
A:
PF0064816=Peptidase_C2=FE(6.7=100)
C2:
PF0064816=Peptidase_C2=FE(11.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTACAGCCAGAAAGTCCCCA
R:
CTGGAAGTGAAAGATGCCAGCA
Band lengths:
167-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]