BtaEX6052767 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37842235-37861242:+
Coord C1 exon
chr10:37842235-37842483
Coord A exon
chr10:37859350-37859419
Coord C2 exon
chr10:37861124-37861242
Length
70 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTTTTTGCTTCACAGGAA
3' ss Score
11.14
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
ATGCCCTACCTGCTGCCAGGATTCTTCTGTGACCGTGTGATCCGTGAGAGGGACAGGAGAAACGGAGAGGGCACTGCCACACAGCCCATCAAGTATGAGGGGCAGGATTTTGTTGTTCTCAGACAACGGTGCCTGGCTCAGAAGTGCCTCTTTGAAGACCGTGTGTTCCCAGCAGGCATCCAATCCCTGGGCTCCCATGAGCTGAGCCAGAAAACCAAGATGAAGGCCATCGCGTGGAAAAGGCCAAAG
Seq A exon
GAAATTTGTGAGAATCCCCGATTTATCGTTGGTGGAGCCAATAGAACTGACATCTGCCAAGGAGATCTAG
Seq C2 exon
GGGACTGCTGGTTTCTTGCAGCCATCGCTTGCCTGACCTTGAACAAGCGTCTGCTTTTCCGGGTCATACCCCATGATCAGAGTTTCACCGAAAACTACGCGGGGATTTTTCACTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868-'2-4,'2-3,4-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=PU(11.0=39.8)
A:
PF0064816=Peptidase_C2=FE(11.3=100)
C2:
PF0064816=Peptidase_C2=FE(19.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCTCAGACAACGGTGCC
R:
TTCAAGGTCAGGCAAGCGATG
Band lengths:
180-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]