BtaEX0006993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008868 | CAPN3
Description
Bos taurus calpain 3, (p94) (CAPN3), mRNA. [Source:RefSeq mRNA;Acc:NM_174260]
Coordinates
chr10:37859350-37866668:+
Coord C1 exon
chr10:37859350-37859419
Coord A exon
chr10:37861124-37861242
Coord C2 exon
chr10:37866585-37866668
Length
119 bp
Sequences
Splice sites
3' ss Seq
TGCCACGTATTTGCCTGCAGGGG
3' ss Score
8.97
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GAAATTTGTGAGAATCCCCGATTTATCGTTGGTGGAGCCAATAGAACTGACATCTGCCAAGGAGATCTAG
Seq A exon
GGGACTGCTGGTTTCTTGCAGCCATCGCTTGCCTGACCTTGAACAAGCGTCTGCTTTTCCGGGTCATACCCCATGATCAGAGTTTCACCGAAAACTACGCGGGGATTTTTCACTTCCAG
Seq C2 exon
ATGATTGTTCCAGTTCAGTTTGAGACAAGAATGGCCTGTGGGCTGGTCAAAGGCCATGCCTACTCAGTCACTGGGCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008868_MULTIEX1-2/5=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(11.3=100)
A:
PF0064816=Peptidase_C2=FE(19.1=100)
C2:
PF0064816=Peptidase_C2=FE(18.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAATTTGTGAGAATCCCCGATT
R:
CTCCTCCAGCCCAGTGACTG
Band lengths:
154-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development