RnoEX6020195 @ rn6
Exon Skipping
Gene
ENSRNOG00000012750 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:RGD Symbol;Acc:1563142]
Coordinates
chr3:160431439-160442144:+
Coord C1 exon
chr3:160431439-160431529
Coord A exon
chr3:160432249-160432365
Coord C2 exon
chr3:160442038-160442144
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTCTGTGCTGTAAGCTA
3' ss Score
3.47
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TCTACAACCCAGACTATGTACTATAGTTCTGCCTCCATAGCCCCAATGCAACCTGACCCCAGGTGGACAGCCCAGCCTCATGGACCTTCAT
Seq A exon
CTACCTGCCCTCCAGCTGCCTCGGTGGTCCAGCCTCTAAGCACGGCACCGCACCCCTGTATCCACCTCAGCAGTGCCAGCCAGGCCTCCAGCCAGGTGCCTCACACGCAGAGAGTAG
Seq C2 exon
TTAACATTGGTACCCAGACTACAGGACCAGGTGGGGAGGGATCCTGTATTCCAGGCCAGCCTCTTTTGGCACATAGAGGATCCTCCGCTGTACACAGTGCCCATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012750-'8-10,'8-8,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.581 A=0.700 C2=0.806
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATAGTTCTGCCTCCATAGCCC
R:
CCCATGGGCACTGTGTACA
Band lengths:
178-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]