BtaEX0025677 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016849 | PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:HGNC:15797]
Coordinates
chr13:74061726-74063223:+
Coord C1 exon
chr13:74061726-74061810
Coord A exon
chr13:74062442-74062570
Coord C2 exon
chr13:74063117-74063223
Length
129 bp
Sequences
Splice sites
3' ss Seq
CATGTTCCCCGTGCCACAAGCCG
3' ss Score
2.26
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCTCCAGCTCAGGCTCCCTACTATGGCTCTGGCCCACCCATCCAGCCTGCCCCCAGGTGGACGGCCCAGCCACCCAGACCGTCAT
Seq A exon
CCGCTTACCCACCCGGGGCCTCGGTGGTCCGGCCAGCAGCCATGTCTCGGCGCCCCTTGACCCCCGTTGGAAGCTCCAGGCAGGTCTCCACCCACGTGCCACACCTGGTGCCCCACACCCAGCGAGTGG
Seq C2 exon
CCAACATTGGTACCCAGACCACAGGACCCAGTATGACGGGATGCTCTACCCCTAGCAGGCCTCTCCTGACACACACATACTCCACGCCAGCACACCGCACTGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016849_MULTIEX2-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.862 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGGCTCCCTACTATGGC
R:
CCTGTCAGTGCGGTGTGC
Band lengths:
186-315
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development