GgaEX6022855 @ galGal3
Exon Skipping
Gene
ENSGALG00000004123 | PABPC1L
Description
NA
Coordinates
chr20:5198091-5199227:-
Coord C1 exon
chr20:5199137-5199227
Coord A exon
chr20:5198742-5198867
Coord C2 exon
chr20:5198091-5198224
Length
126 bp
Sequences
Splice sites
3' ss Seq
GTGCTCCATCTCTCCATCAGCGT
3' ss Score
6.75
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
CCGCAAACCAGAGCTGCTTTCTACAGCCCCAGCCCAGTTGTCCCTGTCCGTCCTGCCACTCGCTGGAGTGCGCAGCCCACCCGGCCTCCCC
Seq A exon
CGTACCCTGCAGCCACACCCATCCTGAGGGCTGCTGTGCAGCCCCGGCGCCTGCTGTCCAACATCAGCACCATGAGACAGGCGTCCACCCAAGTGCCTCGTGTGCCCCCCCAGGCGCAGAGAGTGG
Seq C2 exon
CCAACATAGGGACGCAGACGATCAGTGCCCGGGTGCCCTCCTCACCCACCCTGCGAGGCGCCCCGCAGTACAAGTACTCCCTGGCTGTGAGGAACATCCAGCCGATGGGCAGTGTGCCACCCGGGGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123-'8-10,'8-9,9-10=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.677 A=0.744 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAAACCAGAGCTGCTTTCT
R:
CATCGGCTGGATGTTCCTCAC
Band lengths:
197-323
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]