DreEX6051459 @ danRer10
Exon Skipping
Gene
ENSDARG00000002597 | pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:ZFIN;Acc:ZDB-GENE-030131-5836]
Coordinates
chr8:45337734-45340550:+
Coord C1 exon
chr8:45337734-45337809
Coord A exon
chr8:45339301-45339417
Coord C2 exon
chr8:45340417-45340550
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTGTTGATTGATTATTCTAGGTC
3' ss Score
8.42
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTTCGCTCTTTTTATAATGCTGTACCAAACCTGCGCCCTGCACCACGCTGGGCATCTCAAGCTCCTAGGACACAAG
Seq A exon
GTCCATTTCCAGCTCAGTTTGTGAGGCAAGCAGTGCCACGGAGGCCCTCCACTACCATCAGCACTGTCCGCCAGGCCTCCACTCAGGTTCCTCACATAAACAACACCCAACGAATGG
Seq C2 exon
CCAACATTGGGACCCAGACTGCAGGCGGGAGAGCTGCGGGAACTGCAGTCAGAGGAGTCAGCCAATACAAGTACTCAGCAGGGGTTCGAAACGTGCAACAGGTCATTAATGCCCCAGCTCCTGTTGTTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002597-'14-12,'14-10,16-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.950 C2=0.342
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCGCTCTTTTTATAATGCTGTACC
R:
CTGATGAACAACAGGAGCTGGG
Band lengths:
210-327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]