RnoEX6044930 @ rn6
Exon Skipping
Gene
ENSRNOG00000005229 | Sec16b
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:RGD Symbol;Acc:621658]
Coordinates
chr13:75177963-75181849:+
Coord C1 exon
chr13:75177963-75178305
Coord A exon
chr13:75180947-75181059
Coord C2 exon
chr13:75181729-75181849
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTGTCATATCTCAGGTC
3' ss Score
9.31
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAATTAAATAATTACATAACAACCTCAAGACCCAAAGGGGGAAAAAATCAAAGGGTCAGAGATGGAACTTTGGGTTCCTCAGACACAAGGAAGGACCACGGGACCATCAAGGGATGCAAATAGAAGACTTCAGAGTGGACATTATAGACCCCGTCCTCACCCTCAGTACAGCGGAGATAACTACCACCAATGGCAGGATACCCACAAGAACTCAAAGCCACAGCAGGACCCCAGGGATGACCACCAACAGCCACACTATGTACCCAGGAGTGGGGAGTGGTCCCAGCCTGTGTCTGGAGCTGACTACTTGAAAGGATCTTATCCCAGTCACCCATACTCAAG
Seq A exon
GTCAGGCTACGAGGACCCCTATCAGAGCTACCACACTCCGACACCGAGGGATGAGTACGCTTATGGAAATTACTACTACCACGGGCATCCACAGCTGCCGCAAGGAGAAAGAG
Seq C2 exon
TGGCAAGGCAAGGGAGTCCTTATATCTGGCATGAAGATCACAGAGACCAAAGGCACTTCAGTGAGCATCATTGGGAAAAGCACAACAGTACATTTGAAGCAAACAGTGACACCCAATTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005229-'5-5,'5-3,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.949 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTCAGTACAGCGGAGAT
R:
TGCTCACTGAAGTGCCTTTGG
Band lengths:
252-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]