BtaEX6069957 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000854 | SEC16B
Description
SEC16 homolog B (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr16:60788906-60792164:-
Coord C1 exon
chr16:60791841-60792164
Coord A exon
chr16:60790259-60790371
Coord C2 exon
chr16:60788906-60789026
Length
113 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTGTGATTCTTTAGGTG
3' ss Score
11.01
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
AACATTAGAGAATTTCAGAAGATCTAGGATGGAACCTTGGATTCCCCAGTGGCTGCCTCAGCCATCGGGGAGGCCCCCAGCACCATCAAAGGATCCAGACCGAGGGCTTTGGAAAGATAGATACTATCAGCCTATTCCCCACTCTTGGCACAATGGAGAGAGGGTCCATCAAAGGCAGGATGTGGGCAGGAGCCCCCAGCCACAGCAGGACCCCAGGGAAGACCTCCAGGAGCCTCACTATGCAGCCAGATCTGGGGAATGGCGTCCACCTGTGTCCGGGGTTGACTATTACGAAGGCGGTTATCCCAGTCAATTGTATTCAAG
Seq A exon
GTGGAGCATTGAGGATCTCTATCAGAGCTATTACTCTCCAGCCCTAAGGGAAGAATATGCTTATGGAAGTTATTACTACCATGGACACCCACAGCAGCTTCAGGAAGAAAGAG
Seq C2 exon
TGCCAAGGCAAGGGAGTCCTTATATCTGGCAGGAAGATCATCGAGATCAAAAGTACCTCAATGATCATCAACATGAAAACCAGAATAGTCCATTTGGAACAAATAGGGAGACCCAGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000854-'5-5,'5-3,6-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.308 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTATTCCCCACTCTTGG
R:
TCTCGATGATCTTCCTGCCAGA
Band lengths:
243-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]