HsaEX6035101 @ hg38
Exon Skipping
Gene
ENSG00000120341 | SEC16B
Description
SEC16 homolog B, endoplasmic reticulum export factor [Source:HGNC Symbol;Acc:HGNC:30301]
Coordinates
chr1:177965047-177968039:-
Coord C1 exon
chr1:177967683-177968039
Coord A exon
chr1:177965893-177966005
Coord C2 exon
chr1:177965047-177965167
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTGTGATATTTTAGGCC
3' ss Score
9.04
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GAAGATAAAATAACTGCACAACTTACTCAAAACCCAGGACAAATTCAGAGAGTCAAGGATGGAACTTTGGGCTCCCCAGAGGCTGCCCCAGACACGAGGGAAGGCCACAGCACCCTCAAAGGATCCAGACCGAGGGTTTCGGAGAGATGGACATCATCGGCCTGTCCCTCACTCTTGGCACAATGGAGAGAGGTTTCACCAATGGCAAGACAACCGTGGGAGCCCCCAGCCACAGCAGGAGCCCAGGGCAGACCATCAGCAGCAGCCCCATTATGCATCCAGGCCAGGGGACTGGCATCAGCCTGTGTCTGGAGTTGACTATTACGAAGGTGGTTATCGCAATCAGTTGTATTCAAG
Seq A exon
GCCAGGTTATGAGAATTCATATCAGAGCTATCAGTCTCCCACAATGAGGGAGGAATATGCTTATGGAAGTTATTACTATCATGGACACCCACAGTGGCTGCAGGAAGAAAGAG
Seq C2 exon
TGCCAAGGCAACGGAGTCCTTATATCTGGCACGAAGATTACCGAGAGCAAAAGTACCTTGATGAACATCATTATGAAAACCAGCACAGTCCATTTGGAACAAATAGTGAGACCCACTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-'4-7,'4-6,5-7=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.940 A=0.538 C2=0.756
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCTCACTCTTGGCACA
R:
GCTCTCGGTAATCTTCGTGCC
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains