HsaEX6035101 @ hg19
Exon Skipping
Gene
ENSG00000120341 | SEC16B
Description
Protein transport protein Sec16B [Source:UniProtKB/Swiss-Prot;Acc:Q96JE7]
Coordinates
chr1:177934182-177937174:-
Coord C1 exon
chr1:177936818-177937174
Coord A exon
chr1:177935028-177935140
Coord C2 exon
chr1:177934182-177934302
Length
113 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTGTGATATTTTAGGCC
3' ss Score
9.04
5' ss Seq
GAGGTATGG
5' ss Score
8.98
Exon sequences
Seq C1 exon
GAAGATAAAATAACTGCACAACTTACTCAAAACCCAGGACAAATTCAGAGAGTCAAGGATGGAACTTTGGGCTCCCCAGAGGCTGCCCCAGACACGAGGGAAGGCCACAGCACCCTCAAAGGATCCAGACCGAGGGTTTCGGAGAGATGGACATCATCGGCCTGTCCCTCACTCTTGGCACAATGGAGAGAGGTTTCACCAATGGCAAGACAACCGTGGGAGCCCCCAGCCACAGCAGGAGCCCAGGGCAGACCATCAGCAGCAGCCCCATTATGCATCCAGGCCAGGGGACTGGCATCAGCCTGTGTCTGGAGTTGACTATTACGAAGGTGGTTATCGCAATCAGTTGTATTCAAG
Seq A exon
GCCAGGTTATGAGAATTCATATCAGAGCTATCAGTCTCCCACAATGAGGGAGGAATATGCTTATGGAAGTTATTACTATCATGGACACCCACAGTGGCTGCAGGAAGAAAGAG
Seq C2 exon
TGCCAAGGCAACGGAGTCCTTATATCTGGCACGAAGATTACCGAGAGCAAAAGTACCTTGATGAACATCATTATGAAAACCAGCACAGTCCATTTGGAACAAATAGTGAGACCCACTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000120341-'21-23,'21-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.910 A=0.506 C2=0.713
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCCTCACTCTTGGCACA
R:
GCTCTCGGTAATCTTCGTGCC
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)