MmuEX6028545 @ mm10
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:157529164-157532173:+
Coord C1 exon
chr1:157529164-157529504
Coord A exon
chr1:157531280-157531392
Coord C2 exon
chr1:157532053-157532173
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTGTGATATCTCAGGTC
3' ss Score
7.95
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAATTAAAGTAACTACATAACAGCCTCAAGACCCAACGGGGAAAATCAAAGGGCCAGAGATGGAACCTTGGGTTCCCCAGACACAAGGAAGGACCACGGGACCATCAAGGGATACAAATAGAGGACTTCAGAGTGGACATTATAGACCCCGTCTGCATTCTCAGTACAGTGGAGATAAGTACCACCAATGGCAAGATGCCCACAAGAACTCAAAGTCACAGCAGGACCTCAGGGATGACCACCAACAGTCTCACTCTGTATCCAGGAGTGGGGAGTGGTCCCAGCCTGTGTCTGGTGCTGACTACTTGAAAGGATCTTATCCCAGTCACCTGTACTCAAG
Seq A exon
GTCAGGCTATGGGGACCCCTATCAGAGGTACCACACTCCGACACCGAGGGATGAGTATGCTTATGGAAATTACTACTACCACGGACATCCACAGCTGCTGCCGGAAGAAAGAG
Seq C2 exon
TGGCAAGGCAAGGGAGTCCTTATATCTGGCATGAAGATCATGGAGACCAGAGGTACTTCGGCGAGCATCATCGGGAGAAGCACAATGGTACATTTGGAGCAAACAGTGATACCCAGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'12-13,'12-10,13-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.897 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGTCTGCATTCTCAGTA
R:
CCGAAGTACCTCTGGTCTCCA
Band lengths:
256-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types