MmuEX6028545 @ mm9
Exon Skipping
Gene
ENSMUSG00000026589 | Sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2148802]
Coordinates
chr1:159459295-159462304:+
Coord C1 exon
chr1:159459295-159459635
Coord A exon
chr1:159461411-159461523
Coord C2 exon
chr1:159462184-159462304
Length
113 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTGTGATATCTCAGGTC
3' ss Score
7.95
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GAAATTAAAGTAACTACATAACAGCCTCAAGACCCAACGGGGAAAATCAAAGGGCCAGAGATGGAACCTTGGGTTCCCCAGACACAAGGAAGGACCACGGGACCATCAAGGGATACAAATAGAGGACTTCAGAGTGGACATTATAGACCCCGTCTGCATTCTCAGTACAGTGGAGATAAGTACCACCAATGGCAAGATGCCCACAAGAACTCAAAGTCACAGCAGGACCTCAGGGATGACCACCAACAGTCTCACTCTGTATCCAGGAGTGGGGAGTGGTCCCAGCCTGTGTCTGGTGCTGACTACTTGAAAGGATCTTATCCCAGTCACCTGTACTCAAG
Seq A exon
GTCAGGCTATGGGGACCCCTATCAGAGGTACCACACTCCGACACCGAGGGATGAGTATGCTTATGGAAATTACTACTACCACGGACATCCACAGCTGCTGCCGGAAGAAAGAG
Seq C2 exon
TGGCAAGGCAAGGGAGTCCTTATATCTGGCATGAAGATCATGGAGACCAGAGGTACTTCGGCGAGCATCATCGGGAGAAGCACAATGGTACATTTGGAGCAAACAGTGATACCCAGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026589-'9-8,'9-6,10-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.926 A=0.897 C2=0.951
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCGTCTGCATTCTCAGTA
R:
CCGAAGTACCTCTGGTCTCCA
Band lengths:
256-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: