RnoINT0022295 @ rn6
Intron Retention
Gene
ENSRNOG00000001597 | Atf2
Description
activating transcription factor 2 [Source:RGD Symbol;Acc:621862]
Coordinates
chr3:60721135-60726821:-
Coord C1 exon
chr3:60726716-60726821
Coord A exon
chr3:60721410-60726715
Coord C2 exon
chr3:60721135-60721409
Length
5306 bp
Sequences
Splice sites
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
3' ss Seq
TTTTTCTTTTTACCACTCAGCTG
3' ss Score
7.48
Exon sequences
Seq C1 exon
AGCGAAGTCACCCTGCTGAGAAATGAAGTGGCACAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAGTCTGGCTATCATA
Seq A exon
GTGAGTAATGTTCCATTACCTACAGCTGTAGGCTACATCAGTGACAGACGGCCAGAGTGAGGAGCAGAGCGACCAGAAAAACAGTGCAAGCTGCAGTTCTAGTACTTAAGATTAAGTATCAGAATTTCTGCAGGGTTATTATAGTCTGGGATAGGAAGAAAAGTTTTCCTACTTCTACCTTTTTCCCCTAGGTTAGCTAAACATTTTTAAGTACACTGTTTGCTGTCAGTGATTATTTACCATCACAGGATAACACTTTGTCTTGGATTAACAGAGCCAAACAGTTTTTCTTTTCCCGCCCCCATTTAGTACTAATGAGAATTTTTTAAATCAACTATCTTCATCCAACCATATACTATCTATTTCTAGTTTCATATCTTACTCCTTTTTAGATAATGTCAGCATTGGACAGTATTTGTGTGATTACGAGTTTTTATGTGGTACTGTCACAGTCATAAAAATGCTAAAACAGAACTATATTGAAATGATTTGCTTATAAATTCCCTTCTGAATGCTTTCCTCTCCTAAATTGAGATTCTTCTGTTTTCAGCTTTGTAGAGGTTAATTGTGCTTTTTCATTTCTCTGATGTCCTTCTTGACAGGATGCACAGTTTTGGAACCAGCTGTTACTCCTGAGTAAATGGCCAATTTTGTCCGCCTCACACAGGTTCCTAACAAGTAACAGAGCTGCGGATACATTCATAATACATAACCCGCACCCTTTCTTTCATTTTTATGATTTAGTGATATTTCAGGATATTTGTAAATGTGAAGATTGTTTCAACCATATGTATCCACTTCATTTTAATTTGCCAATGTCAGTAATTCAAAAGAAGGAAACATTTTGTGTAGGATGCAAACAGTTCCTCAGGTACTCACAATAAAACTTAATGGACTACTTTACTTGTAGTCCATTGTAAGCAGTTTCATCAAAATGAGCAATATTTTTTAATTTAAACATAGACATAGCTACTCTCAATTGCCATATATATTTAGAATACTGATTTTTGTCTGTTTTGAGCATATAAGTCTCTATTATTGGATATCTAGTCATTTTGACAGGACAGTGAAACACAGTGGAGTAAATTGGAGCAATATGGAAATATGTTTAGGACTTGTATTAACAGTAATTGCTTAGGGATTAGGCCACTATGGTTCCCAGCTGACTTAGCTTAATTTCCTGTAGATGCTACTGAGTTCAACATTATGCATACATGATTTTCTTCAACAAGAAAGCTGTATTGGATTCTGATGCCTTAAAAGGAAATATATGATGATTTTGTAAAATTAGAAGAAAATTAACTCATTGTATCTAACTGAAAATCTACAGTTTTAAAATCTTTTTATTACTGATTGGATAATCCTAACTTTTAATTATGCAGGCAATATATGTAAACCAGTGATTAATTATTGTTTTATATAATTTTAAGCATACAGAAGTGTTAATGTATCTATTGTTGAATAGGTTAAAACCTACATTCACAAATTCTTAGTAAACTTCTCTTGTGAAAATGCAAGAAATAGAAATTTTTTGTTTGGAAGGTAGTTGCATTTGGTTTTCTCCTTCCTGTTTTTTGAAAACAGGGTGTCTTTCCTTGTTATTTGTACTCAAACATTAGAGAAGAAGAAGGGTTGAATTCTCAAACATCGGAGCTTTAAGCTCAAAGTGCTTCTCTTGAGCGCAGCATGTGTTCTCTAATGTTTTGATTATTCTGGGCATTTTCTCCCCTCAGCTACAAGAACTAGACATATGTGCAGATATAACTCATTGCAAAGTTATTTTATGTGCTTCAATTGTAATTACCTAATTTATAACTGATAGTTCTTTGTACTGCCTTCTGTTAGTCTAGATAAGCACTCTTGCAGTGTTTCATTTTGAGTCATTCTCTCCTATGTATTTTTATATTGTCTTATACTACCAGTCAGCCTTCTTGTCTGATGTTTTTCGAGAACCTAACATTCAGACAAAGGTTAGTTTGTTGTTTTTCTGAAGAATAGTAGCAAAATAAATAACAGCTTTTTAGTATTCTCTTGATTTGAACTGTCGTTGACAGTGTTTTCTTCAAATATGACATTGACATAAGGATGTTACAATACTCATTGTTGCTTAAAATATTTTTCTGGGGGTTGGGGATTTAGTTCAGTGTAGAGCGCTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCCCCGAAAAAAGAAAAAAAATATTTTTCTGATTGTATTCATTTTAGATTTTTCCCCCCAACGGACAAAGTCTTGTTTTATTTTAATAACTGATCCATGTGAGACCATAGCCAGGCCACTATGTACAGACACGAGGGAAACTTCATTTATTGGTCTCTTCCTCCTTAGACAGAGTCTTGAAGATCTCTTCCTTCTTGGCCTGGAGGCGCTCCTCCTTCCTTGGTCTTAGACCTTCGAGCCTCAGCCTGGTCAGCCCATAGCTTCTTGTAGTCCTTGTCTGCCTTCAGTTTGTGGATCTGCTCCATGAGAATCTGCTTGTTTTTTAATACATTCCCTTTGACCTTCAGGTACAGGCTGTGATACACATGGCAGTCAGTCTTCTTAGATTCCCGGTATCTCCTGAGAAGCTAGTGCAGGATCCTCATCCTTCTCATCCAGGTCAACTTCTCAGGCATCCAAGCATTGGCAGTACCCTTCCTCTTCCTTATGCCCATATGCCTGCCCATCTGTCTGGCCAAGGTGTTTTCCCAACAGCGGAGCCTAGGAATGAAGAGTCACAGGTTTCCAGATGATTAGCCCATCTTTGATCAGCTTCCTGATCTGCTGACAGGAGTTGGCGCTGGCGATTTCATTGGTCTGATTGGGATCCAACCAGACTTTTTTTTTTTTTTTACCACAGCAGAGGACACTAGAGGCAAGCGTCTTCTGTAGCCTGAACATACTCATGGCTGCAGACATAGCAGGGAAAGGCCAATTTAGATTTCTGATTGAAATTTTATTATAATTGTAGTTTGAGGTCAGATTTGATTCAGGGAAACATGTTTACACTTATAGCACATTATGGAAAAGATAGAATTTCACCTCACTAATATATTTTAAAACTGGTTTCAAAAATACATGGATGTGAGGCTGATGTATAAACTCTGTAAGAACTACCATATTTCAAAAAATTCTTAAAATGAGGGATTTTATTTATACTCGTTATAATTGCCAAGTATTTTTTTCCCTCCACAAGATACCCACTGTCCGTCCTCTACATAAGAAATCATGGAGTAATCAGTAAGTATCTGGCCATCAGTAACTAGACTGACTACCCTCACATTACTAGAAAGCCTGCATACTTTCTAAATACTTAGCTAAAACTTATTTTTAGTGCCAGGTAAACAAGTCACATAGAAAAGAAAACATTCAAGTTGAACATGTCATTACACACCTGTAATCCCAGCACCTAGGAGGCTGAGGCAAGATGAGTGGCCATGAGTTTTAGACCATCCTGTGCTACACAGTAAGACCCTGTTTCAAAACCTAAAAGAAGGAAGAGAAATAAGAGTATCTAGTAAATGGTATTTAATTTTGAGTGGCAGCAAACAAAACTAAGCTGTATCATTTAGGGATTATATACCACTTTGGTAAATGCAAACACATGAGGGTCAGAATAAAGAAATGTCCAAAGAGTAACTGCATGTGAAGAAGGAAAAAAGTATCATTGACAGTGTCTTCAGTGGATTTGAACGCTGGGCCCACACTGTGTATGTTATCATGATGCCTAGAACTTGAAGATTTAGAAAATATTTATCTCTGTTGAGCATCAGTTTTTTTACCAAATAAAATTCTAATCTACTAAAATAAAGATAAGAGTTTTTTTTTGTTCAGGTCTAAATATTGTAGATTTGTTTCCATAAATACTGAAGATCTCTTCAGTTTCAATATCTGAAGTTTCGTATGAATATATATTTGAATAGCTCTAACAGCTGGTGACATTTAGTCTTTGAATATTACTTATTCTCATGTGAATGCATCATTAGATTCAGGTGTCATAATCATGACTGCAGTAGATGGAAATTCAGGCAGAAAAAAATACAGTTATGGTAAATGCAGAGGGAATAATTAAAATATAATTTGTATATAAGATTCATTTTGTTTAAGACAAAATGGTTATAAATGGTTTTTTATAGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAGAGAACCAAAAAATAAATAAATAAATTATAATTTGTATATAAGATTCATTTTGTTTAAGACAAAATGGTTATAAATGGTTTTTTATAGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCAAAAAAAGAGAACCAAAAAATAAATAAATAAATAAATGGGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCCAGCTCCGAAAAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATGAATGGCGTTTTATATTTTAACAAGAGTGACAGGTAGGCAAATAGACTGACTAGCTTTGTTAAATGTGTAGCCTAGTGCATTTTTTCTTTTTTCTTTTTTTTCGGAGCTGGGGACCAAACCCAGGGTCTTGCACTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCTGCCTAGTGCATTCTTGAGTAATTCTCTGTAAGCAGCTATATTCCAAAGGCCTACCTCATTTTCTTGCTGTATTAAGACCAGGTCTTGTTCTTGAGCTTACACTGGCCTAGAACTGTACATACCAGGTTGTCACCAGATTTGCAGTCTTTCTGTCTCTTCTCTGGGTAGTCCTGAGATTGTGGATGTGCACTGCCACCTCTTCCTGCCTCTTTTCTGTTGGTTTGTGTGTTTGTTTATTGGCAGGGTCTCATTATATTGCCCAGATTGGCCTTGCACTTAGAGATCTGCCTGTTTCTGCCTCTTGGAGTGCTGGGAAAAAGGCTTGTACTTGGCTCTGCCTGATTTTCTTTGACCCTATTTAGCAAGTATGCACACCCTGATGATCCCCTGGTGTGTAGTTGTGACTTCATTTGGCCTGTCTCAGACACAGTTGGCTACTTCCTAACTAGAGCTACTATTCAGTTTATTTCATTTGTACAGCTTGTCCCGAGTAACCACTGCTGTAAAACACCTTTCAGCTTTGTGTGTGGATTCACCTCAGTAATGCTTTTTGGTCAACTTGTATTTTTCTTTTTACCACTCAG
Seq C2 exon
CTGCTGATAAAGATGACAGCTCAGAAGACCTTTCCGTGCCAAGCAGCCCACATACAGAAGCGATCCAGCACAGCTCTGTCAGTACGTCCAATGGAGTCAGTTCAACATCAAAAACAGAAGCTGGAGCCACTTCAGTCCTCACCCAGATGGCGGACCAGAGCACCGAGCCTGCACTTTCACAGATTGTCATGGCTCCTTCCTCCCAGGCACAGCCCTCAGGAAGTTGATTAAAACCTGCAGTGCAACAGGTTTAGATACTGATTAGTGACTTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001597:ENSRNOT00000002174:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.757 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PD(26.2=47.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]