RnoINT0032630 @ rn6
Intron Retention
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98323284-98340988:+
Coord C1 exon
chr13:98323284-98323432
Coord A exon
chr13:98323433-98340894
Coord C2 exon
chr13:98340895-98340988
Length
17462 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CTTAAATGTATTTTTTTCAGAGA
3' ss Score
7.56
Exon sequences
Seq C1 exon
TACCTGGTTATGGATTATTATGTTGGTGGGGATTTACTTACTCTGCTCAGCAAATTTGAAGATCGATTGCCAGAAGAGATGGCTCGGTTTTACTTGGCTGAGATGGTGATAGCCATTGACTCAGTTCACCAGCTCCACTATGTTCACAG
Seq A exon
GTGAGTTAGCCAGTTTGTCAGTGATGGTCTTAGGACACACTCGTGACTAAGATAGGTGTAATATCCTTCCCAAGAGGAGTATGCAGCGTTCAGGGTCCTTATGGTCTGTTCTTACAGTACTGACGTTACTTAGTATTCTAGGCCATAAATTATAGACTTGTTATATATTTTATTGTTCTCAAGAAAAGACGTTGGCTGGGAAGACAGCAAAGGGAAGGACCTGAATTTGAGTCCCAACACCACGTAAAAGCTGGGCACAGTAGCATGTACCTCCTGGGAGAGAGAGTGCAGAGTCCTAGAGGTGGACTGTCTGGCCAAGTCTGTAGGCTCCAGGTGCATCGAGAGCACTTGCCAGTGAGGATGGCGTTGGTCAGACACAGTCTGCCTGAACAACAAAGGAAAGCAAGCTCGATCGATCCCATTAGAATGCTGTGTTTGGTTATACTCGGCAGTTTTAGATGACAAGAAGGAAACTTTGTGAAATCTGACAGCACATACATAATTTATATGGACAATCATAATGTTGGTCCTAATGGCAGAATCTTAATAGCTGATACTGTGTGGGGAGGGAGAGACCTTGCCCTGGCCTCTGTTCTTGGGTTGTTTCCTAGGTTCTCAGAGATAATAGCGCTGGACACTTGCCCTTCTCAAGAAGAGTTTCATAGAAAATACTCCATTTTTTAGAAAATATTGTCAGATTTAGCTTTTTCTTTTCTCTCTTTTTTTCTGTTACATACTGTTATTGGTGATAGGACCTAGGGCTCTGGGCATGTTGGGTAAACAAATGTTCAGCCTCTGAGGAACAGCACCAGGCAGCAGATTTTACACAGAAAGATAATACTAGAAGGTAGACAATCTCTTAAAACTGTGAATTAGTGTGAAGTTGATAAAGGAGATTTTCAGAGACACCAATTTCTTTTCTTTAAATCTTTTTTAAAAATGTATTCATGAACTTAGGATGAGGTAGAATGGTGAGCGTGGATCTGGAAGAGGCACAGGGTATGTGATCAAAATATATTCTATGGAACTTGCAAATAATACAAATATTTTAACTTTTATTAAAAAGGTTCTTAGCTGAAATATTTGCTCATATAGACAAATAATGATAGAATACTAATAATTAAATACTTCTTTTAATACTTCATTTTAAATCTTCAAAGATAGTTTTTAAAAAGTCTAAAATTACACATTTCTCATTATAACTTTATTTGATAGCATCAGTTATTACTCTTGATAATCACTTTTAGGGTTTTAATTCATAATACTAATGTTTTCAAATTTTTGTCACCTAAGGAAAGGAAAGATGTTCATTTTTTTATAAACTGCCATAGGTATTCCATTAATGTTTATTTAAAATTAAGAGATTAAATTGTAAAATCTTCTGAAATGGATTTATTGAGATATAATTAATATATCACATACTTCATTCATTTAAAGTATATAATGGTATTAGCATATTCACAAATACATGTAACCCTTGTCATAAACCATTTAAAATATTTTCATTACTTCAGAAAGAAACCTCATACCATAACCTCTCACCTCAGTTCTAACCCTTCCCAGCCCTAAGATAAAGTTAATTACTTTCTGCTCCATAAATACACTAAATTTGGTCATCTCATATAAATCAGTTCCTACAACATGTAGCCTTTTATGACAGGTCTCTTTTATTTAACATATTGTTTATTAGGTTTATTAATATTGTAGGATATATTTGAAGATGCCTTTGTAGTGAGGTTGATTGCTTGGTAAACTTTTTTCCAGAAGTTTTTCAGACCCAAAGTATATATTATACAACATTCAGAATATAGACATCTCAACTCCAAATTAATCCATCAAGATATTATACCTTGCCTTCCGGTTTCCATCTAAGCCCAGAGCAGATCCTGTGTCACAGCTCTCTGTACCCAGATCCTGCTATGAGAGAGCTGCTCTCCAAGGAGTGCTGACACACCAGGCTTACAGTAGGGTCAAGCCACTCTCAGAGACAGCAGGACCAGCTAACCACAGAGATAACCAGATATAGAGGCAACGACAAGAACCTAAGCAACAGAAACCAAGGCCATTTGGCATCATCAGAACCCAGTTCTCTTACCACAGCAAATAATGGATATCCCAACACACTGGAAAAATGCAAGGTTCTGATTGAAAATCACATTTCATCATGATGATAGAGGACATTAAGAAGGACATAAATAACTCCCTTAAAGAAATACAGAACAACACAGGGAAACAGGTTAAAGCCCTTAAAGAGGAAACACAAAAATCCCTTAAAGAATTATAGGAAAACACAACCAAACAGGTGAAGGAATTGAACAAAACCATCCAGGATCTAAAAATGGAAATAGAAACAATAAAGAAATCACAAAGGGAGACAACCCTGGAGATAGAAAACCTAGGAAACATATCAGGAGTCATAGATGCAAGTATCACCAACAAAATACGAGAGACAGAAGAGAGAATCTCAGGGGCAGAAGGTACCATAGAAAACATTGATACAACCATCAAAGATAATGTAAAATGCAAAAAGCTCCTAACCCAAAATATCCAGGAAATCCAGGACACAATGAGAAGGCCAAACCTAAAAATAATAGGTATAGAAGAGAGTGAAGATTCCCAACTTAAAGGGCCAGTGAATATCTTCAACAAAATTATAGAAGAAAACTTCCCTAACCTAAAGAAAGAGATGCCCATAAACATACAAGAAGCCTATAGAACTCCAAATAGATTGGACCAGAAAAGAAATTCCTCCCGTCACATAATAGTCAAAACACCAAATGCACAAAACAAAGAAAGAATATTAAAAGCAGTAAGGGAAAAAGGTCAAGTGACATATAAAGGCAGACCTATCAGAATTATGCCGGACTTTTCAACAGAGGCTGAAAGCCAGAAGATCCTGGCCAGATGTCATTACAAACCCTAAGAGAACACAAATGCCAGCCCAGGCTACTATATCCAGCAAAACTCTCAATTAACATATATAGAGAAACCAAGATATTCCATGACAAAACCAAATTTACACAATACTTTTCCACAAATCCAGCCCTACAAAGAATAATAGATGGAAAACTCCAATACAAGGAGGGAAACTACACCATATAAAAAGCAAGAAAGTAATCTTCTTTCAACAAACCCAAAAGATAGCCACACAAACGTAACTCCACCTCTAACAACAAAAATAATAGGAAGCAATAATCATTGATCCCTAATATCTCACAGTATCAATGGACTCAATCCCCCAATAAAAGACATAGACTAACAGACTGGATATGTAAACAGGACCCAGCATTTTGGTGCATACAGGAAACAAACCTCAGTGACAGAGACAGACACTACCTCAGAGTAAAAAGCTGGGAATAAACTTCCTAAGCAAATGGTCCCAATAAACAAGCTGGAGTAGCTATTCTAAAATCAAATAACATAGACTTTCAACAAAAGTTATCAAAAAAGATAAGGAAGGACACTTTATAGTAGTCAAAGGAAAAGTCCACCAAGATGAACTCTCAATTCTGAATATTTATGCTCCAAATGCAAGGACACCCACATTTATAAAAGAAACTTTACTAAAGCTCAAAGTATACATTGCACTTCACACAATAATAGTGGGAGATTTCAACACCCCACTCTCATCAATGGAAAGATCATGGAAACAGAAAATAAACAGAGAAAGAGAGAAACTAACAAGTTATGAACCAAATGGATTTAACAGATATTTATAGAACATTCCATCCTAAAACAAAAGAATATACCCTCTTCTCAGTACCTCATGGTACCTTCTCCAAAATTGACCATATAATCAGTCACAAAGTAGGCCTCAACAAATACAAGAAGATAGAAATAATCCCATGCATTCTATCAGATCACCACGGACTAAGGCTGGTCTTCATTAACAATAAAAGCAAGAGAAAGCCCATATATACATGGAAGCTGAACAATGCTCTACTCAAGGATAATTTGGGTCAAGAAATAAAGAAATTAGAAACTTTTTAGAATTTAATAAAAATGAAGGCATAATATAACTAAACTTATGGGACACAATGAAAGCAGTGCTAAGAGGAAAACTCATAGCTCTGAGTGCCTCCAAACAGAAACTGGAGAGAGCATATACTAGCAGGTTGACAGCACACCTGAAAGCTCTAGAACAGAAGGAAGGAAATATACCGAAGAGGAGTAGAAGGCAGGAAATAATCAAGCTCAGAGCTGAAATCAACCAAGTAGAAACAAAAAGGACTATACAAAGAATCAACAAAAACAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCCAAACTGACCAGAGGGCACAGAGACACTATCCAAATTAGCAAAATAAGAAATGAAAAGGGAGACATAACAGAAACTGAGAAATCCAAAAAATCATCAGATCCTACTACAAAAGCCTATATGCAGCAAAACTAGAAAATCTGGATGAAATCAACAATTTTTTAAGACAGATAATCAGGTACCAAAGTTAAATCAAGATCAGATAAACCATCTAAATAGTCCCAAAACTTGTAAAGGAATAGGAGCCATCATTAAAAGTCCAATCAATAAAAGCCCAGGACCAGATGTGTTTAGTGGTGAATTTCTATCAGACCTTCATAGAAGACCTAATTCCAATACTCTCCAAACTATCCACAAAATAGGAACAGAAGGAACACGACCCAGTTCATTTTATGAAGCCACAATTACACTGATACCTAAACCACACAAAGACCCAACAAACAACAAGAACTTCAGACCAATTTCCCTTATAGCCAAAGTACTCAATAAAATTCTAGCAAACCAAATCCAAGAACACATCAAAATTGATCATCAATCATGATCAAGTAGGCTTCATCCCAGGGATATAGGGATGGTTTACTATACAGAAATCCATCAGCATAATCCGCTATATAAACAAACCTTTTCAAAGGAAAGAAAGACATGATCATCTCATTAGATGCTGAAAAAGCATTTGATAAAACTCAACAGCACTTCATGTTAAAAGTCTTGGAAAGATCAGGAATTCAAAGCCCATCCCTAAACACAGTAAGTGCAATATATAGCAAACCAGTAGCCAACATCAAACTAAATGGAGAGAAACTTGAAGCAATCTCACTTAAATCAGGGACTAGACAGACAAGGCTGCCCATTCTCTCCCTACCTACTCAATATAGTACTTGAAGTTTAGCCCCAGCAATTAGACAACAGAAAGAGGTCAAAGAGATACAAATTGGAAAGGATGAAGTCAAAGTATCACTATGTGCAGATAATATGATAATATACTTCACTGGCCCCAGTAATTCCACCAGAAAAGTCCAAGTGGATCAAGGACCTCCACATAAAACCAGATGCACTGAAACTAGTAGAAGAGAAAGTGGGGAAGAGCCTTGAACACGTGGGCATAAGGGAAATTTTCCTGAACAGAATTGCCAAATGGGACCTCATAAAATTGCAAAGTTTCTGTAAGGCAAAGGACTCTGTCTTCAGGAAAAAAGGGCAAACAAAAGATTGGGAAAAGATCTTTACCAGTCCTACATCTGATAGAAGCTGATGAACAACTTCTGCAAAATGGCTGGATATAAAATGAACTCAAACAAATCAGTAGCTTTCTTCTACTCAAAGGATAATCAGGTTGAGAAAGAAATTAGAGAAATGACACCCTTCACAATAGCCACAAATAACATAAAATACCCTGATGTGACTCTAACCAAGCAAGTGAAAGCTCTCTATGACAAGAATTTCATGTCTCTGAAGAAAGAAATTGAAAATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATCAGCAGGATTAACATAGTAAAAATGGCCATCTTGCCAAAAACAATCTACAGATTCAATGCAATCACCATCAAAATTCCAACTCAATTCTTCATAGAGTTGGAAAGCAATGTGCAAATTCATTTGGAATAACAAAAAACCCAGGAGAGCAAAAACTATACTCAGCAATAAAAGAACTTCTGGGGGGAATTACCATTCCTGACCTCCAGCTGTATTACAGAACAATAGTGATAAAAACTGTGTGGTATTGGTACAGAGACAGACAGGTAAATCAATGGAACAGAATTGAAGACCCAGAGATGATCCCACACACCTATGGTCTCATGATTATTGACAAAGGAGCCAAAACCATCCAGTGGAAAAAGCATTTTCAACAAATGGTGCTTATTCAACTGGAGGTCAGCATGCGGAATAATGCAAATCAATCCGTTCTTATCACCTTGTACAAAGCTCAAGTCCAAGTGCATCAAGAACCTCCACATAAAACCAGATGCACTGAAACTAGTAGAAGAGAAAGTGGGGAAGAGCCTTGAACACGTGGGCATAGGGGAAATTTCCTGAACAGAATTGCCAAATGGGACCTCATGAAATTGCAAAGCTTCTGTAAGGCAAAGGACTCTGTCATTAGTACAAAAGGACAAACAAAAGATTGGGAAAAGATCTTTACCAATCCTACATCTGATAGAGGGCTAATACCCAATATATACAAAGAACTGAAGATGTTATACTGTAGAGAATCAAATAACCCTATTTAAAAAATGGTGTACATAACTAAACTAAGAATTCTCAACTGAAGAATATCAAATCGCCGAGAAGTACCTAAAGAAATGTTCAGCATCCTTAGTTATTAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAACTCAGGTGACAGCAGATGCTGGTGAGGATGCGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGACTGCAAGCTGGCACAACCACTCTGGAAATCAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTGCTATCTGAGGACCCAGCTATACCACTCCTAGGCACATATCCAAAAGATGCTCCAACATATAACAAGGATGCATGCCCCACTATGTTCATAACAGCCTTATTTATAATAGCCAGAAGCTAGAAAGAACCCAGATGTCTTTCAGCTGGGAATAGATACAGGAAATATGATACATCTACACAACAGGGCACTACTCAGCTATTAAAACAATGACTTCATGAAATTTTAGGCAAATGGATGGAACTAGAAAATATCAACCTTAGTGTGGTAACTCAGTCACAAAAGAACACACATAGTATGCATTCACTTATAAGTGGCCAAATGCTTGGACTACCCACAATACAATTCAGAGACCATATGAAGCTCAAGAAGAAGGAAGTCCAAAATTTTGATGCTTCAGTTCTTCTTAGAAGGGGGAACAAAATACTCACAGGAGGAAATACGGAGACAAAGTGTGGAGCAGAGACTGAAGGAAAGGCCACCTAGATACTGCTGCACCTGGGGATCCATTCCATATGCAGCCACCAAACCCAGTCACTATTGCTGACGCCAAGAAGTGCTTGCTGACAGGAGCCTGATACGGATGTCTCCTGAGAGACTTTGCCAGAGCCTTATTAATACAGATTAATATGCTTGTAGCTAACCATCATGGTGAGCATGTGGACCTCAATGAAGGAGTTAGAGGAAGGACTGAAGGAGCTGAAGGGGTTTGCAACCCCATAGGATTAACAATATCAATCAACAAGTTCAACTCACTTGAACTCTCAGGGACTTAACCACCAACCAAAGATTACACATGGCTCCAGCCACATAGGTAGCAGAGGATGGCATTGTCTGGCATCAGTAGGAGGAGAAGCCCTTGGTCCTGTGAAGTCTCATTTCCCTATTGTAGGGGAATGCTGGGGTATTGAGGTGATGGTGAGTGGTTGGGAGGGGGAGCACCCTCATAGAAGAAGTGGGAAGGTGGAACCTGGAAAGTATTTACATATTTGCTATGTAAATACGTAAACTATTCAATAAAAAAAGAAATTATAACTCAGTTTTGAGAGGAAAACAATAAACACCAAAACAACAACAACAATAATAATCGACTGATAGAAATCCTAAATGACTAAAGAACAATAACTTAGCAAAGCTCTTATTTTGATGGAATTTGTAAAGAAAATACCTTTGAAATGAATTAAGATAAATATCCCCTCAGTGAAAGAGAAGTTATGAAAAAACAAAACCAAGCAAACAAACCTAAACTTAATGCAAATGGGAATTATTTTTAAGAAGATTTATGTGTTTAAGTGTTTCTTCATGAATGTTTGTGCACCACAGTCATGCCTGATCCCCTCTGAGGCCAGAAGAGGGCGTTAGGATCTCTGGAACAGGAGTTTAGGATGTCGTAAGTCATCATGTGGGTGCTGCTAGCTCAGCTCCAGCTCCTCCAAGAGCAGAAAGTGCTCTTAACCTCAGTCAACTTTTCATCCTGCCTCTATCACTCATGGAGTCGTTAAGAGCGAAAAATCCAGCATTTTGAAGAAAAATATATATACTAAAGACCTTCAGGAGCAGGAATTTGAATATAAGTTAAGGAAATTAACCTCATGTAGGAGAGAGGGGGCGGGGTGGGTAAAATTTTTCTTGTCGGGAAAAAAATAAGGCAAAATTAAAATTCAAATTGGAACAGAAAGTTTCAGTCCCAGAAAATCAAAGCTAGCATATCATAATCAAAGTGTGGAGTGCAAAAATATGTAGTCCTCACAGCTGGCTTTATGTTTGCAGAAAACAGATAAATGGTTTCAGACACTTTTCAGACCACAGAGGCTAAGAGACATTGGAATATTCTTAGATGATTGACAACATCTGTTTGACAGAATTCATATTCAGTAGCCATTTCTTCCTGTAATTTTAGATATTTTACCATGTAGAAATTTTCCTGAACTTTCCTCACAAGAAATCTTCAACAACACACTTCAGAATTTGAGAAAATTGTAACAGAAGGAAATCTGGACTTTCTGGAAGGAAAAAGAGAACAATAAATAGTAAAATTATCAGTCTATACACTCCATTTTCTCTATTATATTCCTGAACACATGTGTTCATTTACAGCAGAAGTTAGCTGAGGCACTCAAGGATGAATCTGCCTTGTGCAGCGACTGTAGCATAATGGACTGTGTGCACCGTTAGTTCCATTGTAGTTACCGACTCCAACGGACTTTCAAATAAAGTCAAACTAGGGAGTGGGAGAACAAGTGGCTTATATGGGAAAGCAAAATAAAAAATAAGTTTATTATTAAACTTTGCAATGACAAAGCCTTATGATCAAAAATGCTTTAAACATTTATGGTATCCAAAAATTAAAAAGTGAGCAGACAGACTTGCAGGTATAAATAGGACATGTAGAAATGTAGAGAAATTCAGGAGATGTTATTCCAGTGAAGTCTTTTGAAGTGGAAACTTAGGGTTCTGTGGAAGTCAGTTCTGTTGGATGGTGCTTTCCTGGGGCAAACAGGTGAAGGAGTGTTTTCCCGAAGGGGACACAGATGAAAGGATGTTTTGCTAAAGCAAGCACATGAAAGGACACATGATGAAGGGTTCTTCACTAACAACACATATGTATTGGTTCACTTTACATTGCGTAGCTGAGCTCTATTTGTTGTGAGTCCATAGAGGGAAACCCACCATAAATCTTTCAGTGAGGTTCCTGAGGCTGCTTGGTACTTCTGAGGACTGGGGCTGATTGGCAGAGTGATGTCAGCCGAGATAGACTCACATGCTGAGGAAAGACTCATGATGAAGCCCGAGACTGGTGGAGGATAAGTGATGTTTGGAGGGAGGATAAATATGATCCAGAGGACAGTGGCTGGGGCTCAGCTCTGAGATCTAAGGCAAACCTCATTGCACATAAAATCCCGAGGGAAGGTACAGGTGAATGGGGGAAGTGGTGCAAACAATGTCCTGTTGAATCAGTTGGCCGTTGGTAAAGGCATAGACTAATCTACATCTCCGAGGGTTTCTTCTTTTCCACTGACTTTTCAAGGGACTTTTTACTGGGTATGGATCAGGAGGTTACTGTCACATGACACCCCCTTTCTTAGTCATTATTTAGAAACACTTAATATGACATTTGTAATTTAGACATGAAATGTGTATAAATACCACAAAGGAGTTTATCAGTCATTATTGCTTTGAATATTCATCAAACTATATTTACTGATAATTGATTAAATTCAATCCTCTTTTCCTTTATTCTGTTCCTTCTGTCTCCTTATTTCCCATACCTGGTCTTCCCCAGTTTCCTTTTCTATAATGGATTTAGGTATCTTAAGGTAAGAGTGCATAAGATTAATTGATACCAAGATCTGAAAAGGAACAGAGACTCATAATGATTAAGACACTGTGTTTGAGGAGCTGGTTAAGAGTGTGTGTGTACTCTCTTGCAGAGGACCTCAGTTCACTTCCCAGCACCCACCCTCGGTGACTGTTAACCACATGTAAGTTCAGCTCCAGGGGAATCCCATGTCCTCTTCTGGCCTCCATTACCTACTCATACAAGACACATGTGCACACACATAACTGAAATAAAGACTTCTAGAGGAAGTCTGTCTACAAGTAACGAAGGACTAGTTGGATGGCTCTGTGCGTAAAGTGCTTGTCTGTACCCTAAGCTAAGCCTGGGACCAGGGTGGAAGGAGAGAATTGACCGAAGAAAGCTGTCCCCTGACTTCCACAGACTGTATGCTATGCTGCCCCAATAGCAATAATAAAATATATATATATATATATATATATATATATATATATATATATATAAATATATATATATAAAATAAACTTAACCAGGGGAAAAACTTCCCATTTCAATTGACACATTTCTATATTTTTTATGTTAACCATTTTTCCTTGTGGAAAAAAAAATCTGGAGTTTCAGAGCAGGTTAATATCTTTAGGGCTACAACACTATCTTTTCATCAACAAAACTTTGTTTTTGAAGGTGAATTGAGTAGATTTGGGATAATGTACTGATTTCCTGTCCTCCTCCTCCTCCTCCACCTCCTCTTCCTCCTCCTTCTTCTTCTTCATCATCATCATCACTACGGCGTTTAGATAGTAGCTCATATAAATCTTAAATTACAATGTATTTTTAGAAGTGCATTACTAATTCCCAGACCAAAACCCAGTTAACTTACTCGATTTCTGCATACTCCCATTTCTCCTTTATATAATTTGTTCCATATTCAAGACTCAGAAATTTCAATTTCTATTAACCTTCTCTCCTTGATTTTATAATATAATTTAATAATATGTTATAGTAAAGCATATCTATAGGTCACAGGAAGTAGGTCAGTCCTGCTTAAATAGGACTTGTTGGGGAAAATCCCCTATAATAAACACAGAGCGGTTTTCATCCACTGCCTCTTAGAATTGCATGAAGAGTTAAGTGTGTTACAGCCTTTTCTGGGTTTTGGGCTGATGTTGTCTCCCTTAGCATGGGTTTTGGAGATAATTGGCCAGTTATCCACTTGATAGTGGAAAAATCATCACCAGTATGTATTCTTGAAATGTTTTGTAGCCTAAAGCTCAAAGAAGACTTAATTTTATCTACCCCCTTTCTCTACAGGTACAGTAGTTCTGGCAAAGTTACCTTTAACATTCAGTCCAGTTTGATTTCAGTGCAGTGTGATTTTTAAAATACATAGTATATAAAGGAGAAGTATAGTGTAATCAAAAAGTAAAAATATGTTCCTTTGGGTGAGTGTTCTTCCAAATTATATGACCAATACAGATGTAGGAAGGATGCCATGGTGCTCACGAGAAAGGGAAATACATGTCTTAGCCCAGACCCCAGTGCCAGTGCCTGGGGGGCGTTCTGACTCAGGACATGGTGTGGCCTGTGTAGTGGAGTTAAATAACCTCTCTACTTACTTCGAAGGTTAGTCAGAGTTAAAAACTACCACTGTGTAGGTTAAATAATACCACTAAATTTACACTTCATTGTTACCAGGATAATGTTTTTATAATCATGCTTCTGGCCTCCTGTCTATGTACCATTGAATGTTTTAAACGTATTTCCCTGTTATAAAAATGTGTCCTTGTGAATACCACTTTTGCTCTGTTTTAGGCAATGCTGTTCTGAGATAGGCAAGTCTCGCCTATTGGACTGGAGTAGCCTTAATATGCTCTTCTTTTTAAACCCAATGTTAATGTTTTTGCTTAATAAGGAGTTACTGATTTTAAAAAACTATAAATAATTGGTTACACTCATTCAAATTGGAGAGACTGAGATAATGTAATTCTGAGGATAATATAGAAATTTTATAATTTCTGAGCACTTCTCTTACTTTTCACAGATTGTAAAGACTGTGACTGACGTCTTGCCTTGGTTTTCCTTTACTCCTTTATTGACAGTGCTTGGAATCTGCTTGTCCAGCTGCTATCTTATTATAAGATGAAGCTGATTCAGACTCGTTCTGAACCCAGATGCCATTTTGCTTGTTATATCAGGAAGTAGATTATCATCCTGTTTCTACTTACCAGTCACTGGGTTCTCTAGGAGCAGAAACTGAACCCGTTTGGGTCAGAAGGATGTTCATTAGGAATGAACACCCATGGAAGGGAATTGGAGGACCAGGATTATTGTGTGGAAAAAGCTATTGAAAGCCAAAGCTTCAGGTGGCCCTACTTGGAGTTCTGGAGGCTTTGTGGCCTTCTATGTCATTGTTAACTTGGTCAAAATTGTTTGACCTTTGTCTTTATACATCAGTTATTCAGAATATATGATTTGTTCCAAGAAAGGGATGGGAGGTTGGGAAGAGGCTGCCTAGAATTCTGAAGGTGATGCATGTAGGAATCAAAATATCACACAATACCTCATAATGTGTGCATACACAGTGTGAGTGAAAAATGATTATGTTGGCAAGGAGCTCCTCTCTCTGAAGCTTGCTCTGTAGGGGCAGCTCTATATAATTTCTTTAAGGCTTTGTCTTTCTGCTATTTATTCCCCTGTGTCTGGTGTCATGACATTTAATTCCATGTCTTTTAGGACTTAGGAAGCTCACACAGTTTATAAGGGCTGTTATGGGCTCTCTTAAGCTGGGTAGGCTCGTTAGAGCTCTGCTCTCCCTCACACCCGCTCTCACTGATGCTGCCACTTCATGCTTCACTACAGCCACATATGCTTGAGACCTTGTAAATGCTACTTATTGCTGAGCCAAAAAATACTTGCTTATGTACCTGCCTCTAATTTTTACTTTTCTTTGCTAATACCTTGATTCTATTTCAGTATATTCCAAATACTAGATAATCATATTTTAAGTATTCTCATAAATCAGATGATATATCATTCATGGAAGACAAGTGCTATACTATTGAACCATAAATTTAGACTCCAAATATGACTCTTAAAAATTCAGTTAGACATCTTTATGGACCTTTGGGGTGTGAATTAGTAACAGGAATAATCAGGTTTGTGACTCGCTCCCTACATGTGCAGAAGTTTTGCTTCTATGATGTTGTCGAAAAGCTGAGGAGATTTGTGGAATTCTAGTCACCAACAACAACTCTTTTCCCTTTCTTTTTGGTTTCTGTCATCTTGTTAAATGGCCTAATAATCTGAGGTTAGAAGTTAGACTAAGTAGGAAAAACTGGAATTTGTGGCTTTTTTTTGGAAAGAAAAACTAACACACAGAATTAATGAAGTAGACCTGCTGTCCCAGGCTACAGAGCCACATCCAGTCATCATTGACATGACATCCTCTTCTGCTGGAGGAAGCCAGGGTTTTATGTAAAGCTGCGTAGTTCAGAGATTTATATCAAAATGGTCAGGCTTATCTGCTCTTTACTCTAGAAATTGTTTCTTGGGAAAAATAAAAAAGGAATAACTAACACAAACCAAGAATGGAGGAAAACAGCATTGGTGTATTTACTGAGAAACGGTGGCAGAAGCCATAAGGCTATGGCAAGCAAGCAAGTTCCTGGGGATGGCCTGTGGTGTCCATGCTGCACTCTGGAGAGGCACGGCCCACACTTCATCCACGATCGCTTCTCGCAATGGTGCGCCTTTCCTGCCACCGCCACATAGTATAATGATTCCTGGGTGTCAGCCCACCCACCCTTTTGGGCAAATTTCCTACAGATCATCAGGAAGGCGAACTTTCATGAATTAATGCTGTTTAGATGAATTAATGACTTTATAGAATAATTTTAGGAAGAATGTTTAAGGAGACGTTTTGCCAGAAAGATGTAATAAAGTTAGAATCAAGAATAATATGCATACTCCTTATAGAATAGTAAATAAAGGCTGCATTATAAGGAATACAACAAGCTTTCATTAATTACACTAAGAAGAAATAGGCTTGGGACACATTTGTGATCAAAGAAAAACATTAATTCTTGGTCAGGTCCAAGGATGAAGCCACAGGTATGCACTCTGATAAAGCAAGGTCATGTGACACTGTTACTTTGAACTTGTAATGAGCTTATAGAATGAAACACTGTTTTGAACTAACTATAAGCTTTCTTCTGTAATTCCCCTTTTATGTAACATTTTATCTATGAGGTAATTTTATAAAGAACTTTTGTCCAAAAAGGTATAAATTGCCAGGGAGAAGAAATATAGTGTAGCTTTTGGAACTCCTGCTCCATCCACCAAATGTATATTCTGTCTGTCTATATGTAGATACATATATAGGTATGTAGATATATGTGTATGTATGTAAGTATGCATGTGCACTTTATGAAATTGATGTAACATGTGGTTGGGCTCAGCCAGAGAGAAAGAGAGAAAAAGTGCATGTGTGTGCGTGTGTGTGTGTTTTGAGTCTCTGGCCTTTGAGCCAGAGAGAAAAGAACCCAGATAACTAAGCCTTTTTTCTTAATCCCTTGCTACTTCAGCAGGAGTTAAATTGCTTGAAGCCAGCAGCTCCTGGCCATAGAATAGCAGAGTTAAAGAGAAGGTTAAATGGCCAAAAGTCAGCAGTCACTGACTCCATACCCCCTTTCTTCAGGAGCTGGGTGCTGGGCTAGCCCCTGGCAGTTAATGAAATGATTTGTTTGAAGTTATAATCCAACAGAATGTGTCCATGTTTTCAAACCATAGGACAGTTAAAATTTTTAACATATGTGATAGGTTAATTAATAGATATAAATAAATAAAAGGTGCAACAGCAGTAATGTAAAAATATGAATAAAGTATTTAATGTCACAGTAATCAAAGAAATAAATACTGTGTTAGGAGATTGACAAAGGTTAAAGTGATCGATACTCCCTATCATTGTTACAGATACTTTTTCACTGTTGACTAAGTTGAAACTTTGTAACTATTTTTCCCCCTGGCAATGATATGTTCATTTGTTTGTTTTCCTCAAAAGCTTGATGTATGTCTAAACATCTATTTTTATCCAAATCACTTATGAATTTATCAAAAGGAAATAATCTGGAATGTGACTCATTTACTTTATGTGAAAACATTGATTATAATATTTTTATGAAGATTGTTGTATGTTGTATTGTTGTGTCTGTTGCAGTGTTGTCCTTAGTAGGAAAAGTGAAAGTAATAGACAGCACAGGGAAATAAAGAGCTTCTGGCAGGCACAGGCAGACACAATGATACAGTTCTAGAACACCTTCAGAAGAAATTATTCCGTTCCATGCAGTTCCAGCCTTTGGTTTAGCTGCTGGAGCGAAGTCCTGTTCATTATCATTGTCAGAAGCCTCTCAAGTCCTGAAATGCCCAGATAAAGGACACTGTTGATTTTATGAATTTATTTAGCATAGCAACAGTTGTGCCCAGCAGTCTGTACTGGGTGCTGCAGACTTGGCAGGGAGGAGGGTAGACACACTGTGGGCCTTCATAGCTCTTTCTGGGTAGAAGAGAAATAGATGTTAGTCAACCAACCAGTAACACTTGGTTTGAAACTACACTTTTGGGGGAGACACGAAAGGTGAAGAGTGATTTATGACAGTTTCTTTTCTGAGACGGGGGAAGCCTTGGTTAGTGATTATCCCTTCTCTCCTGTAGCCCAGAGCGACCTTAAACTTCTGATTTTCCATAGTGCTGAGATAACAGGCAGTTAGCTTGAAACTGTATTTGTTAGCTGTGCCTTACAGAGATCACAATGGAAATTAAAAAAGATATAAGATATAATAAGAGAAAATAAAAGTGTCCTATATTAGAAAATCTCCAATCTTAAACGAAAATATTTGAAAAGGAATGAGGGGAAGATAAATTAAGTCTCTAGTTCAAGAACTTGGGAAAGAAAGCAAAATTAGCTTTAATTACAGAGAAGAAAAAGGTAAAAATGAAGTTAAGTAATATGGATGAAAAATACAGAAATAAGGGAGGCTTAATAGCCAAATGGTAGTATATTAAAAGTCAATAAAAACACAAATACCATTAAAAGCCATTAGTGTAACCACTAGTACATTGTCACTAAAGACAGATGCCTCGTTTGAATGTTGATAGATAGTATAGAATATGGGACCTAGAGGTAGACTGTCTGGCAGGAAATCCTGATGGTGGCCTTTAGTATAAACTGTGTGGTTTAGCTTCCCTCTCTGTGGACAGGTAATGATGTGGGTAGGATGGATATCAAGCACTTAGGTACTGTATGGGGATCTTATAAAAAGTGCAGGAAAAGCTGGGTATGGTGGCTGACATCTATAGTTTCAGCACAACTGGAGTCTGCAGCAAGAGAACTGCCAGGAGTTCCAACCAGTGTAGGTTACAGGGTTTGAAGTTGTCGTGTTTCAGAGTGAGGCTCTGCCTCCAAGTGTAAACCAACCAAACAACAATGGCAAAAATAACAATGATACAAACACACCTTAGAGAAGTGGATACAATATACGTTTTATTAGAAAAGATCAAAACCACTGTATTCCGTTCTAGTAGAGACAGAGGTTATGTGGTAAGTGAAGAATGTTTAAAGAAGTGAACTTCACAATGCAGTCCTCTCCAGGAGGCTGCTGCTGTCTGTTGGGCTCTTACCTTCCTCTGCAAGGTTAATGAGGCACATAAGCTAAAAGTGCAGGCACTAGACTGCAGTGACATGCCTGTGTGACTGTCCTCTCAATAGAGAGTGCTTTCATTCCCAAAAGTATTTCCAGAATGAAAACTACCAGAATTACTGAAGCAATAAGTGCTTTAGAAAATTTTAATATGAATCACAGCTAGTGTGGAACTGGCAAAACATATTTTTCTTAGAATATTTTTAAAAAGATTTATTTATTTACTATATACACATATATGTATGTATGTATATACATAAACACATGTGTAAATATATGTGTGTTTGCTTTGTTTTCATGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAACAGACAGTGCTCTTAACCGCTGAGCCATCTTGCCAGCCTTTTAAGTCTTTTAGTCTTTTTTTTTTTTTTTTGCAGGGTGAAACAGGTTTCTCTGTGTAGAACCTAGCTGTCCTGGAACGCACTCTGTAGACCAATTTAGCCTTGAAATCAAAGATTCAATTGCCTCTCTTAGAATATTTTTTAAAAGGTTGTTGAAGTTTTTCATGTACAATTATCTGACTGTGTTCCAACTAAAACTTAAATGTATTTTTTTCAG
Seq C2 exon
AGACATCAAACCTGACAATATATTGATGGATATGAATGGACATATTCGTTTAGCAGATTTTGGTTCTTGTCTGAAGCTGATGGAAGATGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841:ENSRNOT00000003837:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=FE(18.4=100)
A:
NA
C2:
PF0006920=Pkinase=FE(11.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]