Special

RnoINT0040307 @ rn6

Intron Retention

Gene
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117722760-117723241:+
Coord C1 exon
chr8:117722760-117722822
Coord A exon
chr8:117722823-117723178
Coord C2 exon
chr8:117723179-117723241
Length
356 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
TCTGCTTCTTCTGTTTCCAGGGT
3' ss Score
10.81
Exon sequences
Seq C1 exon
GGGGATCCTGGTATCCCGGGTCAGTCTGGGGCTCCTGGGAAAGAGGGGCTGATCGGTCCCAAG
Seq A exon
GTACAGGGTCTCCTGATAATGACACGGTGGGGGTGGTGTCAGGTCAAAGGAGGTCATCCTGATAGAGTCAAGGAGGGTGTGGCTTTGGGGGATGGTGGGGCTGGTTTTGAGATTTCAGGCGAGGTTGGGGTCACGGTAGAGAGTTAGCAAGAAAGTGTAGAAGGTGAAGGAGGGGGTCATACTGTATCAGGGCGGGGCTTGGGTGGAGTTGGTGTCATGGAATCAGAGTAGAGACTGGGCAGATGCTTGGATCATACACTGTAGAGGTCACGGGGCAGGGGACTCACAAAGATCAAGGATATACAAGAGCAGAAGGATGTCAGGGCTGAGTATTTTTCTGCTTCTTCTGTTTCCAG
Seq C2 exon
GGTGACAGAGGCTTTGATGGGCAGTCGGGGCCCAAGGGTGACCAAGGCGAGAAAGGGGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579:ENSRNOT00000027994:108
Average complexity
IR
Mappability confidence:
NA
Protein Impact

3' UTR

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]