RnoINT0091341 @ rn6
Intron Retention
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70171936-70173613:+
Coord C1 exon
chr8:70171936-70172172
Coord A exon
chr8:70172173-70173494
Coord C2 exon
chr8:70173495-70173613
Length
1322 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
GCTCCTTGTTCTCTTCCCAGATT
3' ss Score
9.48
Exon sequences
Seq C1 exon
CTGCCCTCATGATGGATGAGCTGAATCCATACACCAAGATCAGTCCAGCTCTGGGAGCAGAGCGGCACTCGGTGGGTGCTGTCACAGGCATCATCCTCCTGTTGTTCCTGGTTGTGGTGTTGCTGGGCCTGTTTGCCTGGCGACGGAGGCGGCAGAAAGAGAAAGGCCGTGACCTGGCTCCTCGAGTCTCCTACACCCCAGCCATGAGGATGACCAGCACAGACTACTCTCTCTCAG
Seq A exon
GTCAGGCTATGCCCCAGCATCTTTTCTCACCCATACAACGTGGCAGGAAGTATGTGGTCTTCTCAGGAACATCCACATTCTGGCTCAACATGGGTGGTTATATCTGCAGATGGGTGGCTGCGCCTGGGGATGGTTACCTCAGAGACAATGGGGTGGGGAAAATCTGTGACATTCCAACAGGTGTTGCTTTCTGGAGCCCAAGCTCCTAGCAGCTAGGTCTGGGTGCTACTCCCTACTTCCCCATCCTCCTCAGGATGCCTGCAGGAACATGCATAGTAAGTAGGTCTGAACAACCCAGAGAATGGTTCCCCGGTGTGAAGCCAGGGCACCTGGTAAGCTGTGCCCTATCCACTTTTGCTTTCCCTGGGAGGGTCTCCAGCCATCCCCAAGGAGTGCCCTAGAAGCAGAGTGACAAAGGTGGTGCCTCACATAGGAGAGGTCTACAAGTTCAGGAAGCTTCCCTCTGGCAGATGTGCCAGAGCCCAGTGGGCCTAGAAATGCCGGTGGGCATCCTGTGGTAGTCTGATTGAGGTGTGTATGGAACTGCACCAGATCCTTTCCTTTCCCCTGCACTGGCACCTTGACAAGAAGGCTTTGTGCTTCAGATTTAGCTGACCGGCAGAAGCTCCCAAACTGCTCTGGTTTTGGTTAGGTCTGCACTGATGAGAATGGTCTCTTCCAATGGCTCATAGCTGGTTCAGAGTACCTAGACCACATGTGTTGTTCCTGCTAAGTGTTGCCTTCTGTGTGATAGCTCTATGCCAGGAATATGACAGAAAGAGCTGGCCCCAGTATAGATGCTGCATTCAGAGACCTCCTAGCCACTCTGAGGCCAATCAAAGCAACATCCTCTGATGAAGGCCATGGCTCGCAGAACTTTGGGAGTTTATGACAAAGAGCAGGAAGGGCTGGACTTTTCCCAGTCCTGTAGAATCCTCAGAAGAGCTGGGGTCAACAAAAATGGAGTTGTCTAAGTACTTATTACTAGGGTTTGCCCATAAGGGAAATCAAGAGAAAATCAATCTACCAAAAATAGCAGCTGGAAGGCATAGAGCCATTAGAGCCAGCACCGGCAGCTTCCAGCTGGCCATGCCACCTTATACGAGCAAGCCTGGTCTGTGAGCTGCAAGAGGGAGGTTATTAGTAAGAACAAAGCATGCTGTAGGATGTGGCTAGTGGATGCCACACAGCTTGGAGGATGTGGGAGATTAGCTGCCTCTTTGCAGGGGATATTCAAAATTGCACAACCTCAGCATTTGTTTTGGGGTATCTCAACCAAGGGCAGGTATATGATGGAATATGGCTCCTTGTTCTCTTCCCAG
Seq C2 exon
ATTTGTCTCAAAGTAGCAGCCATGCCCAGTGCTTTTCCAATGCCAGCTACCACACACTGGCGTGCGGGGGGCCTGCCACCAGCCAGGCAAGCACTCTGGACAGGAACAGCCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634:ENSRNOT00000037941:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.325
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(14.3=6.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGCTGAATCCATACACCA
R:
TTGGTGGGGCTGTTCCTGTC
Band lengths:
342-1664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]