MmuINT0097639 @ mm10
Intron Retention
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64693761-64695482:+
Coord C1 exon
chr9:64693761-64693997
Coord A exon
chr9:64693998-64695363
Coord C2 exon
chr9:64695364-64695482
Length
1366 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
3' ss Seq
GCTCCTTGTTCTCTTCCCAGATT
3' ss Score
9.48
Exon sequences
Seq C1 exon
CTGCCCTCATGATGGATGAGCTGAATCCCTACACCAAGATCAGTCCAGCTCTGGGAGCAGAGCGGCACTCAGTGGGTGCTGTCACCGGCATCGTTCTCCTGTTGTTCCTGGTGGTGGTGCTGCTGGGCCTGTTTGCCTGGCGACGGAGGCGGCAGAAAGAGAAAGGCCGTGACCTGGCTCCCCGAGTCTCCTACACCCCAGCCATGAGGATGACCAGCACAGACTACTCTCTCTCAG
Seq A exon
GTCAGGCTATGCCCCGGGCATCTCTTCTTCACCCATACAACCTGGCAGGAAGCATGTGGTCTTCTTAGGAACATCCACTTTCTCGTTCAACATGGGTGGTTATATCTGCAGATGGGTGGCTGGGCCTGGGGATGGTTACCCCAGAGACAATGGGGACGGGGGCGGGGGGAGAAATCTGTGGCATCCCAAGAGGTGTTGCTTCCTGGAGCCCAAGTTCCTAGCAGCTAGGTCTGGGTGTCACTCTCTACTTCCCCACCCCCCGCACACGGCTGGGCATAGTAAGTAGTAACTTTTCTAAGCAACCCAGAGAACGGTTCCGCAATGTGAAGCCAGGGCACTTGGTAAGAAGCTGTACCCTATCCACCTCTGCCTTCCCTGGGAGGGTCTCAGGCCATCCCCAAGGAGTGCCCAAGAAGCATAGTGACAAAGGTGGTGCCTTACATAGGAGAGGTCTACAAGTTTGGGAAGTTTCCCTCTACCAGATATGCCAGAGCCCTGTGTGTCTATGTATGGTAGACATGCCAATGGGCATCCTGTGGTAGTCTGAGTGAGGTGTGTATGGAACTGCACCAGATCCTTTGCTTTCCCCTGGGCTGGTACCTTGAAGAGAAAGCTTTGTGCTTCAAATTTAGCTAACCAGCAGAAGCTCCTGAACTGCCCTGGTTTTGGTTAGGTCTGCCCTGTTGAGAGTGGTGCCTTTCCAATGGCTCATAGCTTGCTTAATTTCAGAGTACCCAGACCACATGTGCCATTCCTGCTAAGTGTTGCCTTCTGTGTGATAGCTCTATGCCAGGAACAGGGTAGTAAGAGCTGGCCCCAATATAGACGATGCATTCAGAGACCTCCTAGCCAGCTACTCTGGGGCCAACCAAAGCAACATCCTCTGATGAAGGCCAAGGCTCGTAGAACTTTGAAAGTTTATGACAATGAGCAGGAAGGGCTGGATTTTTCTCAGTCCTGTAGAATCCTCAGAAGAGCTGGGGTCAACAAGAATGGAGTTCTCTACTTATTCCTAGGGTCTGAACATAAGGGAAATCAAGAGAAAGTCAATCCACCCAAAATAGCAACTTGAAGACATAAAGCCATTAGAGCCAGCATTCAGCAGCTTCCAGGTGACCATGCCACCCTATACTAGCAAGCCTGGTCCGAGAGCTGTAAAGAGGGTGGGCATTAGTAAGAACAAATGCTGGTGGGCTCTCTCCTGCTTGCTGTAGTGCTAGTGGATGCCACACAGCTTGGAGGATGTGGGAAATTAGCTGCCTCTTTGCTGGGGATACTCAAAATTGCATAACCCCAGCATTAGTTTGGGGGTATCTCAACCAAGGGCAGGTGTATGATGGAATATGGCTCCTTGTTCTCTTCCCAG
Seq C2 exon
ATTTGTCTCAAAGTAGCAGCCATGCCCAGTGCTTTTCCAATGCCAGCTACCACACACTGGCGTGTGGGGGGCCTGCCACCAGCCAGGCCAGCACTCTGGACAGGAACAGCCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466:ENSMUST00000093829:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.325
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(14.3=6.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGCTGAATCCCTACACC
R:
TTGGTGGGGCTGTTCCTGTC
Band lengths:
342-1708
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types