BtaINT0091674 @ bosTau6
Intron Retention
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12734628-12736492:-
Coord C1 exon
chr10:12736256-12736492
Coord A exon
chr10:12734747-12736255
Coord C2 exon
chr10:12734628-12734746
Length
1509 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
3' ss Seq
GCACCTTGTTCTCTTCCCAGATT
3' ss Score
8.98
Exon sequences
Seq C1 exon
CTGCCCTCATGATGGAGGAGCTGAACCCCTACACCAAGATCAGCCCAGCGCTGGGTGCAGAGCGGCACTCAGTGGGTGCCGTCACGGGGATCGTCCTCCTGTTGTTCCTCATCGTGGTGCTGCTGGGACTGTTTGCCTGGCGCCGGCGGCGGCAAAAACAGAAGGGCCGGGACCTGGCTCCCCGCGTCTCCTACACGCCCGCCATGAGGATGACCAGCACTGACTACTCCCTCTCAG
Seq A exon
GTCAGACTATGCCCCCAGCACCTCCTGCTGCCACCCCCCCACAACATACACACAACCTAGCAGGAACCACGCGATATTCTTGGGGACCCCGGGTTTATTGCTGCAGGTGGGTGGTGGTGCCTGCAGGGCTGGCTGCTCAGACTCCCCTAGAAAGAGAGTGTGGCGGCGAGCAGCAGGAGCTAACTTAGGTAGACAGGGCTCCCAGGGAGTGCCACTTCCTTGGAGCCCACTCTCAACATCTATGGTTAGCAGCCTTCTTTCATTTCTCCAGAGCTTCCCCTTCTCACTGGGCTTCAGTCGCAGAACACCCACACAAAGCAGTAACTTTCCTAAATGCTGCAGGGGACCCTCTCCCCAGCCTGATGTCTGCATCACCTCAGGAAACCAGCCTTGGGGCCCACCGTCCAAGCCCTGTCTCATTTTTGCTTCCTTGGAGAAGAAGGCCTCAGAGCACCCCTCCCTCCCAGTTCCCAGAGTTAGGAGGGCCTGATCTGTGCAGTGAGACGGGACAGTGCTGAAAGCGTGGGCAATGTCCCTCGAGCCAGGTCTGCGGGAACCCAGCCTGTTCACAAATCCGGTACCAATGCCAGCAGGCATTCGATCTGGGAGTCCAAGAGGTGGGGATGGGGCTCTTGGGCCAACCCTTCCTCTCCCCTAACCCTAGACTGCTGCCTTAGAAATAGAAACAGCTTTTTGCTTCATATTTCAATAAACTGAAGAGGTAAAAATGCCCTAACTTTGCCCCCAGCCCTGAGCCACAGGAGGGTAGGCCTGTCGGAGGTGGGCACAGGATGCCAGCTCTCCACAGCTGGCTCCACGGCTCATGGCTGCCTTAGAAAGCCCAGAGATCACGTCAGCCTGCTGACACGCCATTCCTGCTAAGTGCGGCCTACCATTTGCCCAGCTCTGTGCTACGCACGGCACATCCCAGGCCCGGGCACAGACCCTGCCTGAGAGAGCTGCTGGCCTGCGTGCCGCCCTGGGTTTCAGCCAAAGCTGAGATCCTCTGATGAAGTCCCAAAGCTTATGTATTTGGGGATTTTCTTCTCTGACCATAATAAGCAAGATTGGCTGGGTTTTCCCAGACCATCCCACTGGAATTCCCCAGCCCAGTGTGGAGGTCCTGGAATCTGCAGGAGGGCAAGGCCAGGAGTGGGGTTCTCTTTACAGCCTCACTCCTGGGATCTGACCCCAGAGGAGGCAGGGGAGGGTCAGCTCAGCCCTACACAGTGACTCAAGGATACTGAGGCTGTCAAACTAACACTTCTCATGCTGGTACCACCGCCCACACTGGCATGTTGCAAGCAGGGCCAACACAAGCAAAGGGGCAAGTCAGGCTCTACAGGCTGCCAAGGGGAACAGTAGATGCCAGGAAGCTCGGGGGATGGGGGACTTGGCTGCCTGACTTTGCAGAGCGCTCTCAAGGTGGCCACACCAAGCATTAGCTTAGGGGTGTCTCGTGCCAGGGGCAGGGGTATGATGGTATGTGGCACCTTGTTCTCTTCCCAG
Seq C2 exon
ATTTGTCTCAAAGTAGCAGCCACGCCCAGTGCTTTTCCAATTCGAGCTACCACGCACTGGCGTGCGGGGGGCCTGCCACCAGCCAGGCCAGCACTCTGGACAGGAACAGCCCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140:ENSBTAT00000036967:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.325
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(18.9=8.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGATGGAGGAGCTGAACCC
R:
GGGCTGTTCCTGTCCAGAGT
Band lengths:
342-1851
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development