RnoINT0119971 @ rn6
Intron Retention
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7745273-7746912:-
Coord C1 exon
chr14:7746818-7746912
Coord A exon
chr14:7745330-7746817
Coord C2 exon
chr14:7745273-7745329
Length
1488 bp
Sequences
Splice sites
5' ss Seq
TAGGTCAGC
5' ss Score
4.81
3' ss Seq
TAATTTAATTTGTACCACAGGAA
3' ss Score
6.16
Exon sequences
Seq C1 exon
TTCAAAGTCTGTTGCCAGTTTAAATAGAAGCCCCGAAAGGAGGAGCCATGAATCAGACTCGTCCGTTGAAGACCCTGGCCAAGCATATGTTGTAG
Seq A exon
GTCAGCACTGCCAGCTTCCCTCCCTTCTCCCGGAGCTCACGCACTAGCGAGGCGAGCAGAGCCATGCCCATTGCCAATCCGTTGCCATGGGTCCTGTCTTCTGCTCGCTCAGACTGTGAATGCCTAAAATGCCTCAAGTACAAATCTGAGTGAACTGGGACTGCCTCATGCCAGTACTCCTTAGCCTGCTCCTGTCAGGGAGGCCATGAGCATCCTAGAGAGGAGAGCACCTGGGCCTCGAGCATGCGCACAGCGCACAGCGCTGCCTTCCCTTGGCTGTCCATAGAGGCCTGTGTGGGTAGGCTCTGATGGTGCTGAGCTTGCTTTTTGATGATAGGTCAGGTTTCTTTTAGTTTAAAAGCAGGTCAGTGGCCTCCAAAACCTGTCCCCATTCAAGGGGTAGAGGCTGTTTCTGTGAAAGAGTATACACACACTTGTGTGCGAATATCTGAATAGCACCATTAAGTCGAAACAGTTCTTTGCCTCATGCACCTTGAAAAGGAAACCCCAGGGAAGACCCAGCCCAGAAAGCTAAACTACCACTCTGAGTGTGAGACAGGACCCCTCCTATTGTGTCATCCAGTTCTACTCACTTTTCTCCTTAGACGCAAGTTGAGCCCTAATTATCTGAAGTTAAAACTTGCTGTAGGCTGTAGTTGGATCAGAGACACAGACAACAGGGGGAGTCACACATGGTAGTTGAGAGGGATCTGTAGCGTGCAGCACGACGTCGTGATTGGATGGAAGCATTCACATCTTTCAGAGATTGTGCTGCCGCCAACTGAAATAGAACCAATGGCAAGGACCGGAGCCATTACCAGGCATAGCTTTACCCCACAGGGTCACCTTACTATGCTAACCTAGAACGAGAGCTCACCAACTGTAAGCTGCCCCATCTGTGTGAAAGGTCTGTGATACGTCCAGAGAGTTAGAGCTCTTCCATAAGAAAGCCTGGGTAGCCTGCTGTGGGAGTGCATGGCATGCAGTCCCAGCACTTGTGAGGTAGAGGCAGAAGTAGAAGTCAAGAGTTTAAGACAGGTCTCAACCTCTGGAGTGGGTTTGAGGCCAGCCTAGGCTGTATGAGACCCTGTCTCCAAAAAATAAAAACACAGAGACTCAGAGATTAAGTGAACCTATAAAATCTGCTTAATTTTCTGAATTAATATTTTATTTTATCCATTCTCATTTTCTTTTAACATTTGGACAAGTGTTTCTGAAGTTCATCTCATCATAAATGTTTCACGTTTGATGTATCTCATTGTCAGAAACAGCACATTTGAGTTTAAATTTATGGGCCCAAACAAGTAAATATGCTTAATTTACTAATCAAAAATATCCCTTGGGATAAGACATTCCCCTCAGTGCAAATCAAGGAAAACAGTGCTGCCTTTATGTTTCATTGGTTCTTATGAATTTTTCAGAAAAAAAATTACTTCTATAGTTTCTGGCCATTTTATAAAATGTCTAATAATTTAATTTGTACCACAG
Seq C2 exon
GAATGAGTTTGCCTAGTTCTGGAAAGTCTTCATCCCAAGTACCCTTTAAAGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061:ENSRNOT00000061162:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.860
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]