RnoINT0133856 @ rn6
Intron Retention
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196495867-196496711:-
Coord C1 exon
chr2:196496623-196496711
Coord A exon
chr2:196496506-196496622
Coord C2 exon
chr2:196495867-196496505
Length
117 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
3' ss Seq
CTACCTTTTTCCCATATCAGGAG
3' ss Score
8.2
Exon sequences
Seq C1 exon
CACAGTTGCAGCCCCAACCTGTTTGTCCAGAACGTTTTTGTGGATACCCATGATCTTCGCTTCCCTTGGGTGGCCTTTTTTGCCAGCAA
Seq A exon
GTAAGGGGGATAATGAGGAAGGGGCACATTCTGTGGAAATTGGGGTGAGGGGAGTACCTTCCTTTGTGATCTGGCTTCACCTTTTACCCTCTAAACTCTACCTTTTTCCCATATCAG
Seq C2 exon
GAGAATCCGGGCTGGAACAGAACTCACTTGGGATTACAACTATGAAGTGGGCAGTGTGGAAGGCAAGGAACTGCTGTGCTGCTGTGGAGCCATTGAATGCAGAGGGCGGCTTCTCTAGAGGAAGACTCTTCCTCACTCTGAGGATCCCTTCCCCAGGAACTGGGTCTTTCTGACTCCACGTCTCTGATCTGGCTTCTCCCCAGCTCCTAGTAGATAAAAGTGGGGGTCCTAGATCAGGACGTTGCCAGCGTGGTGCTAGCAGGCACTAGGGTGGGATGACCACCCTAGCATCAGCCTGAGGTCCTTCTCATCCCGTATGTGTTCATGATTCACATGCGCCGTGTATCTGGTTTGTATGGTTTCTTGAAAGTCTTCTAACAAGATGATAAAATAGAGCTTGTGGTTTGTCTTCTCTCCTCAGCCCCATCTTGACCTTCCAGGGAGATGTCATTTCCCAATGGCAACTATCATTAGTTTACCCCTTGATTTTATTTGCCTTGTGTAATTTTTAACAGCAACAAAAGTTCCATGACCAGGAGGGAAGCCTAAGAAAAATAACCCTTCTCAAGTCTTAATAGTCTGACACAGTCATGTTTTATTTAACCTTTAATATACTTTAATTAAAAAAAATTAACAGTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143:ENSRNOT00000028709:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(6.4=100)
A:
NA
C2:
PF0085623=SET=PD(2.9=32.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCATGATCTTCGCTTCCCT
R:
TGGGGAGAAGCCAGATCAGAG
Band lengths:
246-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]