GgaINT0112312 @ galGal3
Intron Retention
Gene
ENSGALG00000017006 | F1N8V8_CHICK
Description
NA
Coordinates
chr1:173520541-173523322:+
Coord C1 exon
chr1:173520541-173520629
Coord A exon
chr1:173520630-173522781
Coord C2 exon
chr1:173522782-173523322
Length
2152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
CAAGATGTCTTATTTCTTAGGCA
3' ss Score
6.51
Exon sequences
Seq C1 exon
CACAGCTGCTGCCCCAATCTCTTTGCACAGAGTGTGTTTGTAGAGACGCACAACAGAAGTTTCCCATGGGTTGCATTCTTCACAAACAG
Seq A exon
GTGAATTTTTTTGGAAGTCCAATGTTTGTTCAAAGCACAAGGAAAGAAAATAGTGCTTAATTATTAAGAAAAAGTTATGCTAAGGGTGCAGCTGTTTACCTCATGAAACCATGGGGTAGCTTGGTTTGGATGCATCCATTTTGGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATACATTTTCTAGGTGGGCACAGCAAGCTGACTCCAAACCTTCTCTTCGCAGCTTCCAAGAGTAGCAGGGTTCTGTGTAGTCAGACTTGTCTTGGGAATGTGGCAATAGGGTTCTCAGAAGGGGAAACTTCCTCTGAAAGCAGAAGATGTGGTTATCTCCTACCAGATGTCAAGAAGGGGAGATGCAGATTGCAGGTGCAACAATGGGAGTGCTGGGAGAGAATTTACAATGCAGAAGAAAGGATTTATTTTAGACAAACCCTCTGCCTGAGGTACACAGATACTCTGTGGAGCCTTGCAACCGTAGGCCCAACCCCTTGGTCCTGTGCTGACACGTGCTGTGGATTGCTTTGTGGGGGTTTATGAGAACTCTGAAGACAATGGTTTGAAACAAGATTTTATTTTAGCTAGAATCTTTCTTGCTCAGGTAGTCAATAAATAACTCTGTAATGGGGATTGAGGCCAATGAACAGAGGCAGTAGTGGTCAGCAGAAGGCAGTTAAGGGGGACTGTTGAAGAAACGTTCTCCTGGCTTGTCCTGTTGCTTTGTCAGCCACCCCTTTGCAACTTATCTACATTAAGGACTGCATTTGAATCATTGAACTTAATTATATATATTCTGTAAACTTACCCAGCCATGTTTTAAATTATTTCATATTTCTGACTCCCAGAACATCCTAAGGCAAAAAGTCTCATATTACAATTATGCTCTGCTTGAAAAGTTCTCATTTGCTTTATTTTCAGCCTGCTGCCTTGGTAATTCACTGGGTATCCCTTATCTTACCCTGTGAGAAATATCACAGAATTACTCTTCTTCTTAATACAAGTATTTTATTGCATTTTCCCTTGGTTGTACCTCAGCATCTTAGTCTCTATTTAATTTGGCATTCATTTTGAACAGTCAATTTCCTGCATAAGAAATTACTTCTCTTTCCTATACTTGTCATAGTGGCTACTTCTTGAGGACCATCCGTTTAACTTTGAGTCCTGGGCTTTGTGCACATGTGCAGTGCAGTTGCACTAAAAGGTTGCTTGTTAGACCAAAGATGGTTACCTTCATCACCACTGCACCCAGAGATCTGTTTGAACCCCAATGATGTGCTGTACATATTAAAAAGAACAAAACTGCCTGTGCTGTCATTTAGATGTATTCATGTATGTTTGGTTTTTTTTTCTTGTTTATTTTTTTGTTCCCAAAAATTTGCCTGGAAGTTAGAATGGGTTGTTTAGACCCCAACTCTACCACACTGCTTGACACAATCTTTATTGCTAGGTACAGGTATTTGCACCCTTCATAGCAGGAAGTATGGAATTCCTAGTAGGAAATCAGCACTCCTTATATCTCTTGGTTCAGTCTGAGCATGCTGCCTGTGCAATGCTTTTGTCCCCATACACATTTGGATTTTGCTTGTGAGTTGCTGGTGACAAATGGTAAGTACATTACTGTTTCATTTAATTCCAGTAAATTGACAAGATGTCTTATTTCTTAG
Seq C2 exon
GCATGTGAGAGCTGGAACTGAACTCACGTGGGATTATGGCTATGAAGCTGGAAGTATGCCAGAGACAGAGATTTCCTGTTGGTGTGGAGTTCAGAAATGCAGGAAGAAAACCTTATAGAGCAAGCTTTTCTACTGTCAGCACCTCATGTACATAGAGATTTATATGCTGTAAGGGACTGTATACTGAGCAGTGCAGTTAAATCTGTGGTGCTAATTGCATTGAACTAAAATGCCTTTTATCTGATAATTTTTTTAATTCACATTTAAATGTCATTTTTAGAGTTTACATGGATAAAGCTGGTTGTCATACAGACAGGCATCAAACTTTTCCTAGATTATATTTTCTGTGCTCCTAATCTTTCTCCCCACCTCCTCCCCTGCACCCCTTCCCGGCTCACCTTCATTTACAAGCTGGAAGAAATCATGTTTTTTCTGCAGTTTGCAACAGAAATATGATGGGTGCACAACAACGGTTGGTTGATGTTTTCTGTGCCCTCCCACAGTGACAAATTAGCATAACTCAGTTTCCTGAAACCTCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017006:ENSGALT00000036477:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(40.3=100)
A:
NA
C2:
PF0085623=SET=PD(18.1=32.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]