HsaINT0148383 @ hg19
Intron Retention
Gene
ENSG00000136169 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:20263]
Coordinates
chr13:50064958-50069139:+
Coord C1 exon
chr13:50064958-50065046
Coord A exon
chr13:50065047-50065867
Coord C2 exon
chr13:50065868-50069139
Length
821 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TTCAAATTTCTACTTTCTAGGTA
3' ss Score
8.75
Exon sequences
Seq C1 exon
CATAGTTGTTGCCCAAATCTCTTGGTACAGAATGTTTTTGTAGAAACACACAACAGGAATTTTCCATTGGTGGCATTCTTCACCAACAG
Seq A exon
GTTTGAAATTGATTTCGCTTACTTAATTCTGAAATTGTGACTTTAAAAATAACAATAGAGGGCTGAGTGCTGTGGCTCATACCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGGAGACTGCTTGAGCTCAGGAGTTTAAGACCAGCCAGAGCCACATGGCGAAACCCTGTCTTTACTAAAAAAAATAGAAAAAGTTCACCAGGTTTGGTGGCCAGCTACTCAGGAAGCTGGGGTAGGAGGATCACTTGAGCCCAAGAGGTAGAGTTTGCACCCTGTCTCAAAAAATGATAATTATAATAGAAAAATATTTTTTAAAGATATATACTATAGCCCCAAATATCTGGTACTGTAGAATATTCAATTATCCTAAACTGTTCCTATTCAATAAGATTTTGCACACCTGAAATTTTGACTCTTATTCCCATTTAGAATGAATGCCTGAAAGGGCTGAAGATATCAGGTATCACCCAGTTCCACTCGGGATAAATGATGCAGAGTGCTACATAATCTTTAATTCAGAGCTATTCCCCAGCTACTTCCACACTGCAGGCCTCAACACATGACTGGGTCCCACTGTTGGCAAAATACACTTCTTCCTCATATTGATAGGTTCCTTCTTACTTAACATTTTAGTAGATTTGAAATAAAACTCAAATGGTTATTCTTAATAAAAGGTCATTCCTAATTGGTGGATGTTGGGTGAGAGAACAGATCATATTTTTGAGGATGGTTAATGTTAATATGAAAATTGATATAATTTGGTTCATTGGTAGTTATTTAGGGTATTTTATGATTCTTTTCAAATTTCTACTTTCTAG
Seq C2 exon
GTATGTGAAAGCAAGAACAGAGCTAACATGGGATTATGGCTATGAAGCTGGGACTGTGCCTGAGAAGGAAATCTTCTGCCAATGTGGGGTTAATAAATGTAGAAAAAAAATATTATAAATATGTAACTAACGCCTGTTTGTGAAATTAGCTTATCAGGCTGAAATTAAAGCCATGCAAAAGAAGGTCTAGGTCCATCAAGGAAATTCCCCTCCGTTTTCCTTTGTCATGGGGTTTATGTTTTATTTCAGATTTTATTTGTGTGACTTAGAAATTCCAGGAACACAATTAGGATATTTTCATACACATAGGGTATCTTGTTCACTGCTGTGCTACTTTACATGAGTAGGATGGAAGTGTATATTTTATATGAAATACCACTGTACAATTTATAATTTATTTACAAATTATATATTAAGAGAAACAAATGTCATAACAGAACTCAGCTGTTTCTAATTGCTTTTGTGACTGTTACCTTTTAGTTCATGCCCCCCCAAAGAGCTAAATTTCACATTTTTACCTACAAAATTGATTTTTAATTCCTGGCAAATAATTTACCATTATGAGCTACAAGGTGGGCAACAGCGCCTGAGGATCTAATTTTATGCATATTACTCCCAAGTATTTTAACACTTGTTGGAGAAGCAATATCTGGATCGATAAAACACTGTCCCATCAACCATTTGAGTGGGGAGAGGGAGAAGCTCTTCTGTAAGTAAGATTCTGGCAAGCTCTTTGAAATGAGTCTTCTTTCCCACAGATTTTCTCTACTCTTTCTATACAAACAGATAGGAGAAGAGGGAATAGAAACCTGGAGGAACTTGAATATTTTTGTTCTAGATAGAGATACAGTTACTGAAAAGGAAACCTAGAAAGTAGTCACACGTTGCTTATTTAGGCCAGAAGTAATTGTACTGGGCAAAAATTTCACTTAAAAAACACAAGAAGTCCAGGTATGGTGGCTCAGACCTGTAATCCCAGCACTTTGAGAGGCCGAGGCAGGTGGATTACTTGAGCCTAGGGGTTCAAGACCAGCTTGGGCAACATGTCAAAACCCTGTCTCTACAAAAAATACAAAAATTAGCCTGGCATGATGGCATGTGCCCGTAGTCTCAGCTACTCAGGAGTGAGGTGGGAGGATCATTTGAGCTCAGAAGGTCAAGGCTGCAATGAGACATAATTTCACCATAGTACTTCCAGCCTGGGCAATAGAGCAAGACTCTCTCTCAAAAAAAACAGCACACACACACACACACGAAAACAATTCTGAACTATGAAATCTGAAACAGCCCCTTGGTATCTCCTGGGCATGATTTGCAAATCTTTTTTTTTTACAGAAAAAAGGCAAAGAGTAAGCACTTTGCCATAGGTTACTTGGCCGTGATCATCTATCTAGTGGAAAAGGGGACTGGGAAGCCCAAGCAGACTGGGAAACCAGACAGCTAGGAAAAGGAGCAAAACATAGCCCAGCAACCTACAGATGAAGAAAGTTGAGAAATCCATTTATTCACCATAGAGACGCAGGAATTTCAGGCAATGCACTAAAATGAAATGGGGGAAAAAAGCTTGATCAGTATGGGAACCATTTTTGTGCAAAAGGGAATATTATGGATCAGCCAGTATTTCTTTGAGCTCTGCCTGTGGAGTCCATTTGACCTTTAGAAATATGAGGTATTCTGTCAGTTTTATCTTCTTGGAGAAATTTCTCCTAAAATCTTGATTTGCTTTAGTCTGGACTGGTTCATAGCCATCATCTTCCATCAGTACCCCAGAGATTCACTTTGTCTCTTATGTGGGATCTGTTTCCAGTTAGATGCCATTATTTTCCTTTTCCTTGGTTTACTCTTCCACATATTGGTAAAGCTCTTCCAATAGCTTTTGGAAAGGAAAAATGAAAAGTAAATGTTTTGAATCTCTGTGTGTTTGACAATGTCTTTATTTTACCCTTATACCTGATTGCTGTTTTGGTTGGCAAGGTATAGGATTCTTTAGTGGTCTCCATGCCCAGTTTTGAAGACATCTGCTAGCTTTCAGTGCTGTTGCTGTGGAGTCTGAAAATCTGTCTTCTGGCTTCCAGGGTGACTACTGGAAATTGAATGCCATTCTGTTCCTTCTCTTTTGCATATATAATCCATTTTTATCTCTCTTGAAGCTTATAGGTTTATCTTTGTCTCAATGTTCTGTCCCTGTTAAGAGTCCATTTTCATCCTTTGTACTAGGTGCCTGGTGGGATCATTCCGTCTGAAACTAATGATTTCCCATCTCTTCACTGTTTCTGGAATTCCTGTTTTCCAGATGTTAGACCTCCAGAATTTGATCTCTAATTTTCCTATCTTTTCTCTTAACTTTCAGCTCTGTCTTCTTGCTAGGACCTTTTCCTAGGAGCATTTCTCAATTTAATCTTCCAGTTCATCTGTTGCATTTTATTTTTCTAGTCTCATATTGTCTCATATTTTTAATTTCTAAGAGCTCCCCTTCTCCGAATATTCTTTTTTTTTAATAGCATCCTATTTTGGCTCATGGTTGCAGTATTTTATCTCCTTGAAGATGTTTGTGTGTTTATGTATGTATATGCACACACGTATACATACACATACAGGCATGCATCTCTGTATTCTTTCGGCATAATCTGTGTCCTCCAGGGTTTGTTTCTTTGTTTCCCCTGTATGTTTGTTTTGGTCGTTCACATTATAGGCTTTCCTCAGAGTTAATGGTCTTGGTAGTCTACTCATATTTAAGTGTGGAACACCAAAAAGCTTACTATAAGCTGAGAGTGTGGTAAAGGGCTCTTTGTTTTACTATGACCTACCTGAGCTATCTTGCTGGGGAACACCCTAATGTCAGTCTCTTTATAAAGGGCCTTTCATTTTGGCCTGGCAAGAAATACTCTTTCATCCTCCTGCATGGAGGGCAAAAAAAAATTTAAAAATTGGCTGCTAGGGTCTGTCTGCTCACTTCCCTGTTTTGCAGACCCCACACTCTTCTGCAATTCATTTCATAGTTGTCAAGACTATACAAATTGTCCTTTTTAATGTTCTCTCTTCTGCTATCCCTAGTTGGCAGTCTTCCTCTTTACAACCTGCTGAAAGTGGAAGACCTCCAGTTTTCCTTTAATTCCTCAGCAAACCACCAACTATTATATGTCTTTTTTCCAGAACAACTTATTTTTTAACTATAATTATATGCATTTATGTTAGATTCACTGAAAACCTCATCTTGTATGGTGCTCTGTACCCTATGGGTGCTAAATAAAGGCTTGCTACTGGCAACTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136169-SETDB2:NM_001160308:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(9.1=100)
A:
NA
C2:
PF0085623=SET=PD(4.1=32.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCATTGGTGGCATTCTTCAC
R:
ACAGCAGTGAACAAGATACCCT
Band lengths:
356-1177
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)