BtaINT0131672 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19146544-19147324:+
Coord C1 exon
chr12:19146544-19146632
Coord A exon
chr12:19146633-19147194
Coord C2 exon
chr12:19147195-19147324
Length
562 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
3' ss Seq
TTAAAATTTCTACTTTCTAGGTA
3' ss Score
9.04
Exon sequences
Seq C1 exon
CATAGTTGTTGCCCAAATCTTTTGGTACAGAATGTTTTTGTAGAAACACATGACAGAAATTTTCCCTTGGTGGCGTTCTTCACCAACAG
Seq A exon
GTTTGAAAATTTTTTTAATATGATTAATTTTGAAATTGTGACTATAAAAATAACAGTACAAAAATATTAAAAGAAGATATATGCTATAGCCCCAACTCTCTGGTACCCTAGAATACTCAGTCATCCCAAACTGTTTAGAGGCGATAAAATTTTAAATAGTTGAAATTTTAATTCTTATTTCCTCTTAGAATTAATGTCCAAAAAGGCTAAAAATGGCAGGTCTCAGCCAGTTCAGTTCAGAGAATAAATGATGCAGAATGCTACATCTTTTAAGTCAAAACTACCCCCGATTACTTCCCCGGGCCTCAGTGCATTGCTGGGGCCCACTCTTTTTAAAAACACACTTCCTCCCTTGTGGATATTGACAAGTTTCTTCTTATTTGGGATTTTAGTAGATTTGAAATAAAACTCAAATAAAAAGAGCATTCCTAAGTAGTGGATGTTGGAGAGAGAAAACCATATTGTTGAGGAGGGTTAATGATGTTAATATGAAAATTGATTATAATCAAATGTAGTTCATTCAGGATAATTTATGATTATTTTTAAAATTTCTACTTTCTAG
Seq C2 exon
GTATGTGAAAGCAAGAACAGAACTAACATGGGATTATGGTTATGAAGCTGGGACTATGCCTGAGAAAGAAATCCTCTGCCAATGTGGGGTTAATAAATGCAGAAGAAAAATATTATAAATCTGTAGTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329:ENSBTAT00000009641:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(9.4=100)
A:
NA
C2:
PF0085623=SET=PD(4.2=32.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATAGTTGTTGCCCAAATCTTTTG
R:
TTTTCTTCTGCATTTATTAACCCCAC
Band lengths:
198-760
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development