MmuINT0142229 @ mm9
Intron Retention
Gene
ENSMUSG00000071350 | Setdb2
Description
SET domain, bifurcated 2 [Source:MGI Symbol;Acc:MGI:2685139]
Coordinates
chr14:60020848-60025571:-
Coord C1 exon
chr14:60025483-60025571
Coord A exon
chr14:60021254-60025482
Coord C2 exon
chr14:60020848-60021253
Length
4229 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTTTTGTTTCTACTCTGTAGGTA
3' ss Score
9.76
Exon sequences
Seq C1 exon
CATAGTTGCTGTCCAAATCTCTGGGTGCAGAATGTTTTTGTAGAAACACATGACAGGAATTTCCCATTGGTGGCCTTCTTCACCAACAG
Seq A exon
GTTTGTGATTTATTTTGCTTATACAATTTAATTCTGTAGCTGTAGCTTTTAAGATAGTAAATATGAAAAGATGCAACATAACCCCAAACATCTGGTATCATAAAATAGTCAGTTTACCTAAATTGTTAACTAGTCAGTAAAAATTTAAAGGGTTGGAATTAATACTTTTTTTTTAGATATTTTCTTCATTTACATTTCCATCCATTTGCCTAAGAATTTCATAAATTCATTGTTTTTAATTGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTTTCTGTATTAATTCCTCTGTTGACGGACATCTGAGTTCTTCCCAGCTTCTGGCTATTATAAATGAGGCTGCTATGAACATAGTGGAGCATGTGTCCTTATTACAAGTTGGAACATCTTCTGGGTATATGCCCAGGAGAGGTATTGCGGGATCTTCCGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTCCAGAGTTGTTGTACCAGCTTGCAATCCCACGAACAATGGAGGAGTGTTCTTCTTTCTCCACATCCTCACCAGCATCTGCTGTCACCTGAATTTTTTATCTTAGCCATTCTGACTGGTATGAGGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGTTGAGCATTGTTTCAGGTGTTTCTCAGCCATCTCAGAATCCTCTGCATCTGAGATTTTCTCTTCTATCTCTTGTATTCTGTTGGTGATGCTCACATCTATGGCTCCTGATTTCTTTCCTAGGGTTTCTGTCTCCAGAGTTATCTCCCTTTGGGTTTTCTTTATTGGTTCTACTTCCATTTTTAGACCTTGAATAGTTTTGTTCAATTTCATCACCTGTTTGGTTGTGTTTTCCTGTAATTCTTTAAGGGATTTTTGTGTTTCTTCTTTAAGGACTTTTACCTGTTTAGCATTTTCCTGTAATTCTTTAGGGATTTTTGTTCTTCCTCTTTAAGGCCTTCTACCTGTTTAGCCGTGTTCTCTTGTATTTCTTTGAGTTATTAATGTCTTTCTTAAAATCCTCACCAGGCGGTGGTGACACATGCCTTTAATCCCAGCACTTGAGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGTGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTGGAAAACAAAACAAAACGAAACCAAAACCAACCAAACAAACAAAAAACAAAACAAAACAAAAAACCCTCTACCAGAATCATGAGATATGATTTTAAATCGGAATCTTTTCAGGGGTGTTGGGGTATCCAGGACTTGCTGTGGTGCTGGGTTCTGGTGATGCTGAGTGGTCTTGGTTTCTGTTAGTAAGATTGTTACGTTTGCCTTTCGCCATTTGGTAATCTCTGGCGTTAGCTGTTATAGTTCTCTCTGGTTGGAGCTTGTTCTTCCTGTGATTCTCTTAGCCTCTGTCAGCACTCCTGGGAGTCCAACTTTCTTCTGAGTCTCAGTGGTCAGAGCACTCTCTGCAGGCAAGTGCCCAGAGGTCTGGAGCTCAGCTCTGCCTCCTGGCTAAAGATGAAGGCCGGAGAAGGACCCTGTCCCAGAAGCTATATTGCTACTGCTGCCCACGTGCTCTCCTGTGAAGACTGGTCTCTTTGGGACCCAGGATACAAGATGGTTACAGAGTTAGTTTTTATTGTGCATACTCATGAACAATATAGCATACAATATGCGTAAAAATAACCTTTTGGGGGGTAGGGTATAGAGGACTTTCGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATTGAAAAAAATAACCTTTTCCATATGTAGTCTTATAATTTGACTTCTAAATATAAACATTTAATTTTACACCAGTTAATTATATATGTTGTAGAAAGCAGAGAGAGTCATTTAGCTTTGTGGGTTTTTTGTGACAGGGTTTTGCTGTTTATTCTTTGTAGAGTTGATACTCAATACATAATCCAGAACGTTTTTTGTTGTTGTTGATTTGCTTTTTGTTAGTCTGTTTTCAAGACAGGGTTTCTTTGTAGACTTGCCCTTGAACCCAGATCCTCCGGTCTCTTCCTCCCAAGTGCTGGGATTAAAAGCATGGGCTACCACCACCAGGCTGGCCATGAACTTTTAGTCCTCCTCCCTTAACCTCCTGAATGCTGGGATTACTAGTGTGTACCACCAGGTGTGGCTAAGTGATTAGCTCTTTAACTTGCTTTTCTGTACCCTCCCAACCATCAGTCAAGTAATCCACTCTGTTTTCCCCCACATATTTCTCTCAGTTGCTTCTCAGTTGCTCTGTGGGTCCCTCTGCATAGACCCCTGTTACTTTTCTGATTATATAGTTTTTGTTTTGGTTTGGTTTTAATTTCGTTGTTGTTGTTTGTTTTTGAGATAGGATCTCACTTTGTAGCTCTGGCTGGCTTGCAACTCATAGAGATCAACCCACCTCTGCTTCCCAAGTGTTGGGCTTGAGCCACACCTAGACCTTTACTTTTATTTAGGATAATGTTTTTTATCTACTTCAGATTTACTCCCAGTCTCACATAAGGTTTTACTAATCTTTAGAATTATTTACAAGTATTAGTAAGTAAATATAAGAGAGTTACATTTATAAAGAAACACAGGTGTGGACATGTGTTGGACAGCACTGTTAAAAGTGAAGTAGCTGTAGGGTAGGGACATTAGAACACCCAACACACACAAAGCAGTGGCTTTGACCACCAGCACAGCCAGAAAGAGTGGACGAGTATTGCAAAGTTAAGGTGTAGTCAGTGCTTTGAGACAGCATGCCAGACATTGCTATGGAGATTATGCATTAAGACAAATGACAAGTGATTGACTTTGTTTTAGGACACTGGTCATCAAATACATATGGCAACTACACTTGAATTTCTAGGAAAGGGCAAGCACCAACTATTATGAAAGAGGTCGATGTTATGAGATCCTGTTCTGTCACATGATATTCATAGCCAGGTGGAAAGGTCTGAGGAAACCAGTGGAGCTGACCATGTACCTACACAGGGAACACGTCTTGGACAGCTAGGTGCCATGTCATTCAGGCCCACAGTGTTTTTACATACACCATGCTCATAGTTGCATCCATAGAAAGAAGGTAGACATATACCTCCGTTCAAATAGCACGTTTTATTTAGCAACTTACTGCAGGTTGCTCCTGGGTCTGAACAGAGTTGTCTCTTGACTTTCAAGTCTCTTAGAGATGGGATAACCAGCTCACAGCTCAACGCAACAATGAGTTGAAATTCAGAGAGGTGTTAGAAATGATCACAAGCAAAACCATACTGGATAAGAAGTGACCAATTTCTATGGTTCTTAAAAATGTGGGAGAAAAATACAAGAAGAAAAATATTAAGGAAAAAGATAGCAGATGGTTTTGATTCACAAAGTCATTGCTAAAACACCCAAAGGAAACCATTTATATCCTAAAGTAAAATAGCAATTGAAAAAGAAAGCTATCAGGGCTGGAGAGATGGCTCAGTGGTTAAGGGCACTGACCGCTCTTCCAAGGGTCCTGAGTTCAATTCCTAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTCACGTAAATAAAATAAATAAATCTGAAAAAGAAAAAAAACAAAAACAAAAACAAAAACCGGGCAGTGGTGGTACACGCCTTTATAAAGATCCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTTTAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAGAAAAAAAGGAAAGAAAGAAAGAAAAAAAGAAAGCTGTCCCACAGAAGAAATTAGCTCATGCCCTGTATCTTCTTTAAAGTCAGAATTACCCCATTTGCTTGTGTGCCACAGTCTTGATGTTTGCAAAACTCCGTTCCACATGGATATTCCTTCTTACATAGGATTTTGGGAGACTTGAAATAAAAATCAAATGACTAACTTTTAATAAAGATTATTTTGAATGGTGGACAGTGTGGAGAGAAAATAGATTGACTTTAGGATGGCTGACTTTGTTAATATGAAAATTGTAATATTCAAGGTTAATTGTTGTGGAATAGTTTAGTATGATTTACGATTCTTTTTTGTTTCTACTCTGTAG
Seq C2 exon
GTATGTGAAAGCAAGGACAGAACTAACGTGGGATTATGGTTATGAAGCTGGGGCCACGCCTGCAAAGGAAATCCTCTGCCAATGTGGGTTTAATAAGTGTCGGAAAAAATTAATATAACTTTATATCTGATATCCATCCGTGAACTGAGCTGCTCAATGTATAACAATATCAGTTGTCAAAGAGATTATGGTTAATACTTCTGTTTCCTTTGTTCAGGGTATTGATGTTTTATGTCTAATTTTGTATCTTAGGTTAGAAGCAAAATAAGGGCACTCATCAAGTATCACAGTGTTATTACAGTTAATTAACTTTACATGAGTAGAATATAAATAATATATTTTATGTACATATCATTGTATAATTTGTAACTTTTGTATTTTATATATTAATATAAAATTATACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000071350-Setdb2:NM_001081024:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(9.4=100)
A:
NA
C2:
PF0085623=SET=PD(4.2=32.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: