RnoINT0133867 @ rn6
Intron Retention
Gene
ENSRNOG00000021680 | Setdb2
Description
SET domain, bifurcated 2 [Source:RGD Symbol;Acc:2319564]
Coordinates
chr15:39712861-39715739:-
Coord C1 exon
chr15:39715651-39715739
Coord A exon
chr15:39712979-39715650
Coord C2 exon
chr15:39712861-39712978
Length
2672 bp
Sequences
Splice sites
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
3' ss Seq
TTTTTATTTCTGCTTTGTAGGTA
3' ss Score
10.57
Exon sequences
Seq C1 exon
CACAGTTGCTACCCAAATCTCTGGGTGCAGAACGTGTTTGTAGAAACCCATGACAGGAATTTCCCATTGGCGGCCTTCTTCACCAACAG
Seq A exon
GTTTGTGGTTATTTTGCTTATACAATTTAATGCTGCACTGTGGCGTTTAAGATAGTAAATATGAAAAGATGCAACATAGCCCCAAACATCTATTATCATAAAATAGTTTACCTAAACTGTTAACTACTCAGTAAAAATTTAAGTGGTTGAAATTTCTATTTTTAATCTCATCTAAAATTAATTTCCTAAGGAGCTAAAGACCTCAGATTACATAATTCAGTTCAGGAAACATGAAGGAGAATGCTGTGTTCTTTTGTTTTGATTAACAGAATTAATTGTTATTGTGCATGCTCATGAACAATATAGTATACAATATAGTGTAAAGCAAGCTTCAATATGTAGTTTTATAATTTGACTTACTTCGAAATAGAAACATTTTCTTTTTACCCCAGTTAATTGTATGTGTTGTAAGCAGAGAGATTCATTTAGCTTTGTGAGTTTTGGTGACAGGGTTTTGCCATTTACTCTTTGCTGATTTAGTACTCAGTACATAACCCAGAACTTTTTGGTTGTTGTTGATTTGCTTTTTGTTTGTTTGTTTTCAAGACAGGGTTTCTTTGTAGACCTGGCCTTGAACCCAGATCCTCCTGTCTCTGCCTCCCAAGTGCTGGGATTAGGGGCATGGGCTCCTACCACCAGGCTGGCCATGAATTCTTAGTCCTTCTACTGTAGCCTCCTGAGTGCTGGGATTACTAGTGTGTACCACCAGGTTTGGCTAAATGGTTAGCTTCTTAACTTGCTTCTCTGTACCCTCCTACCCATCAGTCAAGTAATTCATTTCATTTTCCCCACTATTTTTCTCAGTTACTTCTTATCTGTGGGTCCCTCTGCGTACACCCCTATTGCTTTTCTGCTTATGCAGGTTTTTTGTTCTGTTTTGTTGGTTTTTGTTTGTTTGTTTGTTTGTTTGGAGTTTTGTTTGTTGTTTTTGAGATAGGATCTTAATTTGTAGCTCTGGCTGGCCTTGAACTCACAGAGATCCACCTTCCTCTGCTTCCCAAGTATTGGGACTGAAGGCCTCACCTAGACCTTTACTTCTTTTTAGGGTAATGGTTTTTATCTACTTTAGATGTACTCCCAGTCTATGTAAGGTTTTAGTAATCTTTAGAATTATTTACAAGTATTAGTAAGTAAATGTAAGAGAGTTGTATTTATAAAGAAACAAAGGGTGTGGACATGTGCTAGACAGTACTTTTAAGTGAAGTAGCTGTAGGGTGGGGACGTTAAAGCACCCAACACATACAAAGCAGTGGCTTTGACCACTAGCACAGTCAAAGAGTGGATGAGTTTTGCAAAGTTAAGGTATAGTCAGAGCGTTGAGACAGCTTGCCAGGCATTGGTATGGAACTAACTGTATGCATTAAGACAAATGACAAGTGATTGACTCTGTTTTAGGACAGTGGTCATCAAATACATATGGCAACTACACATGAATTTCTAGGAAAGGGCAAATGCCAACTATCTTGAAAGGGGTCAGTGTATGAGACCCTGTTCTATCATATGATCATCATAGCCAGGTAGAAAGGTCTGAGGAAACCAGGGGAGATGAGCAAGTACCTACACAGGGAACACACCTTGGACAGCTAGGTGCCATGTCATTCAGGCCCACAATGATTTTTACATATGCCATGTTCACAGTTGAATTCATGGAAGGAAGGTAGGCAAGTACCTCCATTTGGACAGTGTGTTTTATTTAGCATCTTACTGCAGGTTCCTCCTGGATCTGAACGGAGTTGTCTCTTAACTGTCAAGTCTCCTAGAGGTGGGATAACCAGCTCACAGCCCCACACAACAATGAATCCAAATTCAGAGGTGTTAGAAATGACCACAAGAGGGGTGGGGAGATGACTCAGCGGTTAAGAGCACTGACTGCTCTCCCCGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGAATGGAATCTGATGCCCTCTTCTCATGTGTCTGAAGGCAGTGACAATGTACTCACATACATAAAATTAATAAATAAGCCTTTAAAAAAAAAGACACATGTTTTAAAAAAAATGACCACAAGAGGGGTTGGGGATTTAGCTCAGTGGTAGAGTGCTTGCCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAGGAACCAAAAAAAACCCAAAAACAAACAAACAAAAAAAGACCACAAGAAAATCACGCTGGACAAAAAGTGATAATTTTCTACTGTTCTTAAAAATGCGGGAGAAAAATACAAGAAGAAAAATATTAAAGAAAAAGATAACAAATGGCTTTAATTCACAAAGTCATTGACAAAACACCCAAAGGAAAACATTTATATCCTGAAGTAAAAATAGCAATTAGAAAGAAAGCTATCCCACATAAGAAATAAGCTCATGCCCTTTGTCTTCTTTAAAGTCAGAATTATCCTATTTGCTTGTATGCCACAGCCTTTATGTTTGCAAAACACCATTCCTCATGGATATTCCTTCATACATAGGATTTTAAGAGACTCAATACAAAAGTCAAATGACTACTTTTAGTAAAGATTATTTTGAATGGTTGGCAATGTGGAGAGAATAAGGTGGCTGATTTTATTAATATGAAAATTGAAATATTCAAGGTTGTTCTCTGTGGAGTAATTTAGCATGATTTACAATTCTTTTTTATTTCTGCTTTGTAG
Seq C2 exon
GTATGTGAAAGCAAGAACAGAACTAACATGGGATTATGGTTATGAAGCTGGGACCATGCCTGAAAAGGAAATCCTCTGCCAATGTGGGTTTACTAAGTGTCGGAAAAAAATAATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021680:ENSRNOT00000036781:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(9.4=100)
A:
NA
C2:
PF0085623=SET=PD(4.2=32.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]