BtaEX0001690 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018010 | ABCA4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:HGNC Symbol;Acc:HGNC:34]
Coordinates
chr3:49604847-49614664:+
Coord C1 exon
chr3:49604847-49605023
Coord A exon
chr3:49607234-49607456
Coord C2 exon
chr3:49614443-49614664
Length
223 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTCCTCTTGCTTTAGTTT
3' ss Score
9.11
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTACTGGGATTCTGGCCCCAGAGCTGATCCTGTGGAAGACTTCCGATACATCTGGGGAGGGTTTGCCTATCTGCAGGACATGGTTGAACATGGGATCACGAGGAGTCAGGCCCAGGAGGAGGTTCCGGTTGGAATCTATCTCCAGCAGATGCCTTACCCCTGCTTCGTGGATGACTC
Seq A exon
TTTTATGATCATCCTGAACCGCTGTTTCCCTATCTTCATGGTGCTGGCCTGGATCTACTCTGTCTCCATGACTGTAAAGAGCATTGTCTTGGAGAAGGAGTTGAGACTGAAGGAAACCTTGAAAAATCAGGGTGTCTCCAACAGGGTGATTTGGTGTACCTGGTTCCTGGACAGCTTCTCTATCATGTCGATGAGCATCTGCCTGCTGACAATATTCATCATG
Seq C2 exon
CATGGAAGGATCCTGCATTACAGCAATCCGTTCATCCTCTTCCTGTTCCTGTTGGCTTTCTCCATTGCTACGATCATGCAGTGCTTCCTGCTCAGCACCTTCTTCTCCAGGGCCAGTCTGGCAGCAGCCTGCAGTGGTGTCATCTACTTCACCCTCTACCTGCCACACATTCTCTGCTTCGCTTGGCAGGACCGAATTACAGCCGACATGAAGATGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018010-'13-13,'13-12,14-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(20.8=100)
A:
PF126982=ABC2_membrane_3=FE(26.1=100)
C2:
PF126982=ABC2_membrane_3=FE(25.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGATCACGAGGAGTCAGG
R:
GTCGGCTGTAATTCGGTCCTG
Band lengths:
295-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development