GgaEX6044206 @ galGal4
Exon Skipping
Gene
ENSGALG00000005752 | ABCA4
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N8D7]
Coordinates
chr8:12632474-12636735:+
Coord C1 exon
chr8:12632474-12632650
Coord A exon
chr8:12634524-12634746
Coord C2 exon
chr8:12636514-12636735
Length
223 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTGCTTTTTGTAGCTT
3' ss Score
9.31
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GTATTGGGATCCTGGTCCAAGAGCTGATCCTGTGGATGATTTCCGTTATATATGGGGAGGCTTTGCATATCTCCAAGATATGATTGAGCATGGGATTATAAAGACCCAGACCAACACTGATGTGGCACTAGGAATTTATCTTCAGCAAATGCCATATCCATGTTTTGTGGATGATGT
Seq A exon
CTTTATGATAACCTTAAACCGCTCCTTTCCCATCTTCATGGTGCTTGCTTGGATATATTCCGTTTCCATGACTGTGAAGAGTATAGTTTTGGAGAAGGAAATGCGTCTAAAGGAGGCTATGAAGAACAGAGGCGTCACTAATGGAGTGATTTGGTGCACTTGGTTCCTAGACAGCTTCTTCATGATGGCTGTGAGCACATTCCTCCTCACAGCACTGATTATG
Seq C2 exon
CATGGCCAAGTCCTGCATTATAGCAGTCCTCTTCTCTTCTTCCTATTCCTACTGACATTCTCTACAGCCACCATAATGCAATGTTTCTTGTTCAGCACCTTTTTCTCCAAAGCAAATCTGGCAGCTGCCTGCAGTGGTGTCCTGTACTTCACCTTGTACCTGCCTCACATTGTCTGCTTTGTCTGGCAAGATCGCATCACTGTTAATCTGAAGATCCTAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005752-'14-16,'14-15,16-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.1=100)
A:
PF126982=ABC2_membrane_3=FE(21.4=100)
C2:
PF126982=ABC2_membrane_3=FE(21.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGTCCAAGAGCTGATCC
R:
AGCTGCCAGATTTGCTTTGGA
Band lengths:
294-517
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]