DreEX6095566 @ danRer10
Exon Skipping
Gene
ENSDARG00000057169 | abca4a
Description
ATP-binding cassette, sub-family A (ABC1), member 4a [Source:ZFIN;Acc:ZDB-GENE-050517-3]
Coordinates
chr24:28522287-28526992:+
Coord C1 exon
chr24:28522287-28522463
Coord A exon
chr24:28524337-28524559
Coord C2 exon
chr24:28526771-28526992
Length
223 bp
Sequences
Splice sites
3' ss Seq
ATTCATAACCCACGCTCTAGCTT
3' ss Score
1.14
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATACTGGGATCCTGGCCCAAGAGCAGATCCCATGGATGACTTGCGGTATATTTGGGGAGGATTTGCTTACCTGCAGGACATGATTGAACATGGAATAATAAAGACACACACAGGGAAGGAATGGCCGTTAGGAGTTTACCTGCAGCAGATGCCCTATCCCTGCTATGTGGATGACCT
Seq A exon
CTTCATGCTGACCCTGAACCGTTGCTTTCCGATCTTCATGGTTCTGGCCTGGGTTTACTCTGTGTCGATGACGGTGAAGAGCATCGTGCTGGAGAAGGAGATGAGGCTGAAGGAGACCCTGAAGGCCATGGGCGTCACAAACCGCGTGCTCTGGTGCACGTGGTTTATTGACACCTTCTTCATGATGGCCTCCAGCACAGCCCTGCTCACTCTTATCATCATG
Seq C2 exon
GGAGGAAAAGTGCTGAACTACAGCAATCCCATCATCCTCTTCCTCTTCCTGCTCACTTTCACCACAGCAACCATCATGCAGTGCTTCCTCATGAGTGTGTTTTTTAATAAGGCCAATCTGGCGGCGGCCTGCAGTGGCATCATTTACTTCACCCTGTACCTGCCGCATGTAGTCTGCTTCGCCTGGCAGGACCGCATTACCAAAGACATGAAAATCATGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057169-'17-18,'17-17,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(5.4=20.0)
A:
PF126982=ABC2_membrane_3=FE(33.2=100)
C2:
PF126982=ABC2_membrane_3=FE(32.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGAGGATTTGCTTACCTGC
R:
GACTACATGCGGCAGGTACAG
Band lengths:
298-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]