MmuEX6073818 @ mm10
Exon Skipping
Gene
ENSMUSG00000028125 | Abca4
Description
ATP-binding cassette, sub-family A (ABC1), member 4 [Source:MGI Symbol;Acc:MGI:109424]
Coordinates
chr3:122103434-122110683:+
Coord C1 exon
chr3:122103434-122103610
Coord A exon
chr3:122105308-122105530
Coord C2 exon
chr3:122110462-122110683
Length
223 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTCCTCTCGCTTCAGCTT
3' ss Score
8.73
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTACTGGGATTCTGGTCCCAGGGCGGATCCTGTCGAAGATTTCCGGTACATCTGGGGAGGTTTTGCCTATCTACAGGACATGGTGGAGCAAGGAATCGTGAAGAGTCAGATGCAGGCAGAGCCTCCAATTGGAGTCTATCTCCAACAGATGCCTTATCCCTGCTTTGTGGATGACTC
Seq A exon
CTTCATGATCATCCTGAATCGCTGTTTCCCTATCTTCATGGTGCTGGCGTGGATCTACTCTGTCTCCATGACCGTTAAGGGCATTGTTTTGGAGAAGGAGCTGAGGCTGAAGGAGACCTTGAAAAACCAAGGCGTCTCTAATGCTGTCATCTGGTGTACCTGGTTCCTGGATAGCTTCTCCATCATGGCGCTGAGTATCTTCCTCCTGACGCTGTTCATCATG
Seq C2 exon
CATGGAAGGATCCTCCATTACAGCGATCCCTTCATTCTCTTCCTGTTCTTGTTGGCCTTTGCCACTGCGACCATCATGCAGAGCTTCCTGCTCAGTACTTTGTTTTCCAAGGCCAGCCTTGCAGCAGCCTGCAGTGGGGTCATCTACTTCACCCTCTACCTACCACACGTTCTGTGCTTTGCCTGGCAGGACCGGATGACGGCCGACCTGAAGACGACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028125-'20-27,'20-22,26-27=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(20.7=100)
A:
PF126982=ABC2_membrane_3=FE(26.0=100)
C2:
PF126982=ABC2_membrane_3=FE(25.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCGGTACATCTGGGGAGG
R:
ACGTGTGGTAGGTAGAGGGTG
Band lengths:
308-531
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types