DreEX6026111 @ danRer10
Exon Skipping
Gene
ENSDARG00000062661 | abca4b
Description
ATP-binding cassette, sub-family A (ABC1), member 4b [Source:ZFIN;Acc:ZDB-GENE-050517-4]
Coordinates
chr2:15582044-15585754:+
Coord C1 exon
chr2:15582044-15582220
Coord A exon
chr2:15584977-15585199
Coord C2 exon
chr2:15585533-15585754
Length
223 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTGTCCCATATCAAGGTT
3' ss Score
6.76
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
Exon sequences
Seq C1 exon
ATACTGGGACCCTGGCCCACGGGCAGACCCTGTGGAGGACCATCGCTATATCTGGGGAGGTTTTGCCTACCTGCAGGACTTGATTGAACACGGGATCCTTAAATTACACACAGGTCATGACTGGCCCTTAGGTGTTTACCTGCAGCAGATGCCCTACCCCTGCTACGTGGATGACAT
Seq A exon
GTTCATGCTGACCCTAAACCGCTGTTTCCCCATCTTCATGGTGCTGGCCTGGATCTACTCAGTGTCCATGGTTGTGAAGAGCATTGTCCTGGAGAAGGAGATGAGGCTGAAGGAGACTCTGAAGGCCATGGGCGTCTCTAATGGAGTCATCTGGTACACATGGTTCATTGACAGTTTCATTATGATGACCGCCAGCACTGCTCTGCTGACTGGCATTGTCATG
Seq C2 exon
GCTGGAAAAGTGCTCAATTACAGCAATCCGATCATTCTGTTCCTGTTCCTCCTCACATTCACCGTGGCCACTATCATGCAGTGCTTTCTGATGAGTGTTTTCTTCAATAAGGCCAACTTGGCTGCTGCTTGTAGCGGCATTATTTACTTCACCCTTTACCTCCCTCACATCTTCTGCTTCGCCTGGCAGGATCGCATTACCAAGGACATGAAGTTAGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062661-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(5.8=21.7)
A:
PF126982=ABC2_membrane_3=FE(33.0=100)
C2:
PF126982=ABC2_membrane_3=FE(32.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTACCTGCAGGACTTGAT
R:
AGCAGAAGATGTGAGGGAGGT
Band lengths:
292-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]