RnoEX0004877 @ rn6
Exon Skipping
Gene
ENSRNOG00000012892 | Abca4
Description
ATP binding cassette subfamily A member 4 [Source:RGD Symbol;Acc:1309445]
Coordinates
chr2:225708098-225714886:+
Coord C1 exon
chr2:225708098-225708274
Coord A exon
chr2:225709948-225710170
Coord C2 exon
chr2:225714665-225714886
Length
223 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTCCTCTCCCTTTAGCTT
3' ss Score
12.08
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTACTGGGATTCTGGTCCCAGGGCAGATCCTGTCGAAGATTTCCGGTACATCTGGGGAGGCTTTGCCTATCTACAGGACATGGTTGAGCAAGGAATCGTGAGGAGTCAGACCCCGGCAGAGCCTCCAATTGGAGTCTATCTCCAGCAGATGCCTTACCCCTGCTTTGTGGATGACTC
Seq A exon
CTTCATGATCATCCTGAATCGCTGTTTCCCCATCTTCATGGTGCTGGCATGGATCTACTCTGTCTCCATGACTGTTAAGGGCATTGTCTTGGAAAAGGAGCTGAGGCTGAAGGAGACCTTGAAGAACCAAGGTGTCTCTAACGCTGTGATTTGGTGTACTTGGTTCCTGGACAGCTTCTCCATTATGTCAATGAGTATCTTCCTCCTGACGCTGTTCATCATG
Seq C2 exon
CACGGGAGAATTCTCCATTACAGCGATCCCTTCATTCTCTTCCTGTTCCTATTGGCCTTTGCCACCGCGACCATCATGCAGTGCTTCCTGTTCAGTACTTTCTTTTCCAAGGCCAGCCTCGCCGCAGCCTGCAGCGGGGTCATCTACTTCACCCTCTACCTGCCACACATTCTGTGCTTTGCGTGGCAAGACCGGATGACCGCCGACCTGAAGACCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012892_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(17.8=100)
A:
PF126982=ABC2_membrane_3=FE(22.4=100)
C2:
PF126982=ABC2_membrane_3=FE(22.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCTGGGGAGGCTTTGC
R:
AATGTGTGGCAGGTAGAGGGT
Band lengths:
303-526
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]