BtaEX0009078 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008963 | CIT
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N747]
Coordinates
chr17:57866541-57907688:+
Coord C1 exon
chr17:57866541-57866694
Coord A exon
chr17:57886226-57886409
Coord C2 exon
chr17:57907583-57907688
Length
184 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTTTCTTTAACCAGCTC
3' ss Score
7.55
5' ss Seq
TGAGTAAGT
5' ss Score
8.82
Exon sequences
Seq C1 exon
CGGTTCTTGAAGTTTCCAGATGACCCCAAAGTTAGCAGTGAATTGCTTGATCTAATCCAGAGTTTGTTGTGTGGCCAGAAAGAGAGACTGAAGTTTGAGGGCCTTTGCTGTCATCCTTTCTTCTCCAAAATTGACTGGATTAACATTCGTAACT
Seq A exon
CTCCTCCCCCCTTCGTTCCCACCCTCAAGTCTGATGATGACACCTCCAATTTTGATGAACCAGAGAAGAATTCGTGGGTTTCATCCTCTCCGTGCCAGCTGAACCCCTCAGGTTTCTCGGGCGAAGAACTGCCGTTTGTGGGGTTTTCGTATAGCAAGGCACTGGGAATTCTTGGTAGATCTGA
Seq C2 exon
GCCTGTTGTATCAAGTCTGGACTCCCCTGCCAAGACTAGCTCCATGGAAAAGAAACTCCTTATCAAAAGCAAAGAGCTGCAGGACTCCCAGGACAAGTGTCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008963-'17-15,'17-14,20-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.274 C2=0.417
Domain overlap (PFAM):
C1:
PF0006920=Pkinase=PD(15.6=76.9)
A:
PF0043319=Pkinase_C=WD(100=75.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGATGACCCCAAAGTTAGCA
R:
TGTGACACTTGTCCTGGGAGT
Band lengths:
243-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development